View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_23 (Length: 361)
Name: NF1516_low_23
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47395729 - 47396074
Alignment:
| Q |
1 |
atttcatcctcaaatgaagggtggccatcaaccaaaagtctatgaacaagcataagagatttaacagcaacaatccaatcacgagtttttgttaatctct |
100 |
Q |
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| T |
47395729 |
atttcatactcaaatgaagggtggccatcaaccaaaagtctatgaacaagcataagagatttaacagcaacaatccaatcacgagtttttgttaatctct |
47395828 |
T |
|
| Q |
101 |
tagaaattgagattaaacaagcattgacatagcctttagaataagatgtaagattaagaatttctcttacatatttgtcatcagcaggaacttcttcatg |
200 |
Q |
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| T |
47395829 |
tagaaattgagattaaacaagcattgacatagcctttagaataagatgtaagattaagaatttctcttacatatttgtcatcagcaggaacttcttcatg |
47395928 |
T |
|
| Q |
201 |
gcttgttgctttgacaaccaaaacttcaaggtcaggtgctaaatttccagcaacttttgctatgctgatgcttgtttgatccttcattgctccaattgct |
300 |
Q |
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| T |
47395929 |
gcttgttgctttgacaaccaaaacttcaaggtcaggtgctaaatttccagcaacttttgctatgctgatgcttgtttgatccttcattgctccaattgct |
47396028 |
T |
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| Q |
301 |
ttgcggattgttgatggtgccattttggaagagaaaggatcaaatc |
346 |
Q |
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| T |
47396029 |
ttgcggattgttgatggtgccattttggaagagaaaggatcaaatc |
47396074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 47833417 - 47833359
Alignment:
| Q |
253 |
acttttgctatgctgatgcttgtttgatccttcattgctccaattgctttgcggattgt |
311 |
Q |
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| T |
47833417 |
acttttgctatgttgatgcttgtttgatccttcattggtccaatttctttgtggattgt |
47833359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 47835060 - 47835023
Alignment:
| Q |
55 |
agagatttaacagcaacaatccaatcacgagtttttgt |
92 |
Q |
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| T |
47835060 |
agagattcaacggcaacaatccaatcacgagtttttgt |
47835023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 47833480 - 47833444
Alignment:
| Q |
108 |
tgagattaaacaagcattgacatagcctttagaataa |
144 |
Q |
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| T |
47833480 |
tgagattaaacaagcattgacttaacctttagaataa |
47833444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 1923713 - 1923668
Alignment:
| Q |
251 |
caacttttgctatgctgatgcttgtttgatccttcattgctccaat |
296 |
Q |
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| T |
1923713 |
caacttttgctatgcctatgcttgtttgatctttcactgctccaat |
1923668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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