View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_24 (Length: 357)
Name: NF1516_low_24
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 42942882 - 42943211
Alignment:
| Q |
13 |
aatatctgagggagaaataaccgaggtgatgagagtatacactaaaattaaaaaacttaaacatgaatttannnnnnnnnnnnacattatcttgtaacac |
112 |
Q |
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| T |
42942882 |
aatatctgtgggagaaataaccgaggtgatgagagtatacactaaaattaaaaaacttaaacatgattttatttattttt---acattatcttgtaacac |
42942978 |
T |
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| Q |
113 |
aagtaacaattgtttttcgaattttggttattctctcatttcctttcacttcataagattgtgtgtttcatttcttaggctctaattgctacttggaaag |
212 |
Q |
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| T |
42942979 |
aa----caattgtttttcgaattttggttattctctcatttcctttcacttcataagattgtgtgtttcatttcttaggctctaattgctacttggaaag |
42943074 |
T |
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| Q |
213 |
aagcatgtgcatcaacaagttcaagtnnnnnnnnttattcccaagggaacat----------acaagttaatcttagaggtccatgcaatgctccaattg |
302 |
Q |
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| T |
42943075 |
aagcatgtgcatcaacaagttcaagt-aaaattttgattcccaagggaacatacaagttaaaacaagttaatcttagaggtccatgcaatgctccaattg |
42943173 |
T |
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| Q |
303 |
agattcaagttgatggaacaattgaagcacctgctgat |
340 |
Q |
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| T |
42943174 |
agattcaagttgatggaacaattgaagcacctgctgat |
42943211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 24243916 - 24243855
Alignment:
| Q |
275 |
cttagaggtccatgcaatgctccaattgagattcaagttgatggaacaattgaagcacctgc |
336 |
Q |
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| T |
24243916 |
cttaaaggtccttgtaaggctcctattgaacttcaagttgatggaacaattcaagcacctgc |
24243855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 24298282 - 24298343
Alignment:
| Q |
275 |
cttagaggtccatgcaatgctccaattgagattcaagttgatggaacaattgaagcacctgc |
336 |
Q |
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| T |
24298282 |
cttaaaggtccttgtaaggctcctattgaacttcaagttgatggaacaattcaagcacctgc |
24298343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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