View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_25 (Length: 356)
Name: NF1516_low_25
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 47127709 - 47127372
Alignment:
| Q |
11 |
atcatcaactagttagccattggtatgtcattcaaaaaatcacaaagctcaataataccagtgtttgaaactttaataaactatgattcctgtgcaggct |
110 |
Q |
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| T |
47127709 |
atcatcaactagttagccattggtatgtcattcaaaaaatcacaaagctcaataataccagtgtttgaaactttaataaactatgattcctgtgcaggct |
47127610 |
T |
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| Q |
111 |
gtttactcatgcagtgattgaaccatttataatagctacaaacagacaactgagtcttcttcatccaattcataagctcttgaagccacatttcaaggat |
210 |
Q |
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| T |
47127609 |
gtttactcatgcagtgattgaaccatttataatagctacaaacagacaactgagtcttcttcatccaattcataagctcttgaagccacatttcaaggat |
47127510 |
T |
|
| Q |
211 |
acaatgcatataaatgccttagctaggcatacacttatcaacgctggaggggtactagagaaaacagttttccctggtaaatttgcattggaaatgtcag |
310 |
Q |
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| T |
47127509 |
acaatgcatataaatgccttagctaggcatacacttatcaacgctggaggggtactagagaaaacagttttccctggtaaatttgcattggaaatgtcag |
47127410 |
T |
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| Q |
311 |
ctgttgtatataaaaattgggtattcagtgaacgagca |
348 |
Q |
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| T |
47127409 |
ctgttgtatataaaaattgggtattcactgaacaagca |
47127372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 6262958 - 6262887
Alignment:
| Q |
114 |
tactcatgcagtgattgaaccatttataatagctacaaacagacaactgagtcttcttcatccaattcataa |
185 |
Q |
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| T |
6262958 |
tactcatgcagttgttgaaccatttgttatagcaacaaacagacaacttagtgtgcttcatcctatttataa |
6262887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 9605574 - 9605646
Alignment:
| Q |
114 |
tactcatgcagtgattgaaccatttataatagctacaaacagacaactgagtcttcttcatccaattcataag |
186 |
Q |
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||||||||||||| |||| ||||| || ||||| ||||||||||| || ||| ||||||| || ||| ||||| |
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| T |
9605574 |
tactcatgcagtggttgagccattcatcatagcaacaaacagacatcttagtgttcttcaccctattaataag |
9605646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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