View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1516_low_26 (Length: 354)

Name: NF1516_low_26
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1516_low_26
NF1516_low_26
[»] chr2 (1 HSPs)
chr2 (8-334)||(31623182-31623505)
[»] chr8 (5 HSPs)
chr8 (220-296)||(16221874-16221950)
chr8 (220-295)||(40114431-40114506)
chr8 (221-296)||(41529018-41529093)
chr8 (220-298)||(36755191-36755269)
chr8 (220-295)||(24044244-24044317)
[»] chr5 (3 HSPs)
chr5 (220-298)||(32259395-32259473)
chr5 (221-296)||(42631240-42631315)
chr5 (220-295)||(9022816-9022891)
[»] scaffold0114 (1 HSPs)
scaffold0114 (220-296)||(34503-34579)
[»] chr3 (1 HSPs)
chr3 (220-296)||(50239341-50239417)
[»] chr1 (2 HSPs)
chr1 (220-298)||(49878060-49878138)
chr1 (220-292)||(45920630-45920702)
[»] scaffold0284 (1 HSPs)
scaffold0284 (220-296)||(2980-3056)
[»] chr6 (1 HSPs)
chr6 (220-297)||(14211598-14211675)
[»] chr4 (2 HSPs)
chr4 (220-296)||(6551989-6552065)
chr4 (220-295)||(312160-312235)
[»] scaffold0211 (1 HSPs)
scaffold0211 (220-292)||(20612-20687)
[»] chr7 (1 HSPs)
chr7 (226-295)||(7939633-7939702)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 31623182 - 31623505
Alignment:
Q  8 gagcagagatggaaggtctccaaccccgttggatgaaaatcaacgttttactgagtgtgtttaaatgtgtaagttgtcaattttaaaggaaagttgcttc 107  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31623182 gagcacagatggaaggtctccaaccccgttagatgaaaatcaacgttttaaagagtgtgtttaaatgtgtaagttgttaattttaaaggaaagttgcttc 31623281  T
Q  108 aaaagtgcatttttgtttatactacaaacaaatggcttgcgnnnnnnnntcacaaatgcatatcgttttagcatgaatcggtgtaaaatcttgttttagt 207  Q
    |||||||||||||| |||||||||||||||||||| |||||        |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  31623282 aaaagtgcatttttttttatactacaaacaaatggtttgcg-aaaaaaatcacaaatgcatatcggtttagcatgaatcggtgtaaaatcctgttttagt 31623380  T
Q  208 tgaataaaggtggttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctagtctgcgggtgt 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| || |||  ||| ||||||||||||| | ||||||||||    | ||||||    
T  31623381 tgaataaatgtggttttatcccatgtttgaatttaactgacactagataaatcata--attatctccctcaactatgacgaaattctaactcgtgggtgt 31623478  T
Q  308 ccatactagttctctttaaattgcata 334  Q
    ||| |||||||||||||||||||||||    
T  31623479 ccacactagttctctttaaattgcata 31623505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 16221874 - 16221950
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctag 296  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||||    
T  16221874 gttttatcccatgtttgaatttaactgacactagatacatcataatattgtctccctcaactatgacgaaattctag 16221950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 40114431 - 40114506
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattcta 295  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| | ||||||||||    
T  40114431 gttttatcccatgtttgaatttaactgacactaaatacatcataatattgtctccctcaactatgacgaaattcta 40114506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 41529018 - 41529093
Alignment:
Q  221 ttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctag 296  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| | |||||||||||    
T  41529018 ttttatcccatgtttgaatttaactgacactagatacatcataatattgtctccctcgactatgacgaaattctag 41529093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 36755191 - 36755269
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctagtc 298  Q
    ||||||| ||||||||||||||||||||||||  ||| || ||| |||||||||||||||||| | ||||||| |||||    
T  36755191 gttttattccatgtttgaatttaactgacactgaatacatcatattattgtctccctcaactatgacgaaattttagtc 36755269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 24044317 - 24044244
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattcta 295  Q
    |||||||||||||||||||||||||| ||||  |||| ||||||||||| ||||| | ||||| | ||||||||||    
T  24044317 gttttatcccatgtttgaatttaactaacac--gatacattataatattatctcctttaactatgacgaaattcta 24044244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 32259395 - 32259473
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctagtc 298  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | ||||||| |||||    
T  32259395 gttttatcccatgtttgaatttaactgacactagatacatcataatattgtctccctcaactatgacgaaattttagtc 32259473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 42631315 - 42631240
Alignment:
Q  221 ttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctag 296  Q
    ||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||||||||| |  ||||||||||    
T  42631315 ttttatcccatgtttgaatttaactgacattagatacatcgtaatattgtctccctcaactatgatgaaattctag 42631240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 9022891 - 9022816
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattcta 295  Q
    ||||||| ||||||||||||||||||||||||| ||| || |||||||||||| | ||||||| | ||||||||||    
T  9022891 gttttataccatgtttgaatttaactgacactaaatacatcataatattgtcttcttcaactatgacgaaattcta 9022816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 34579 - 34503
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctag 296  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| | |||||||||||    
T  34579 gttttatcccatgtttgaatttaactgacactagatacatcataatattgtctccatcaactatgacgaaattctag 34503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 50239417 - 50239341
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctag 296  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | | |||||||||||    
T  50239417 gttttatcccatgtttgaatttaactgacactagatacatcataatattgtctccctcaaccatgacgaaattctag 50239341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 49878138 - 49878060
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctagtc 298  Q
    ||||||||||||||||||||||||||||||||| |||  | |||||||||||||||||||||| | |||||||||||||    
T  49878138 gttttatcccatgtttgaatttaactgacactatatacgtcataatattgtctccctcaactatgacgaaattctagtc 49878060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 45920630 - 45920702
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaatt 292  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| | |||||||    
T  45920630 gttttatcccatgtttgaatttaactgacactaaatacatcataatattgtctccctcaactatgacgaaatt 45920702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 2980 - 3056
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctag 296  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||  | |||||||||||    
T  2980 gttttatcccatgtttgaatttaactgacactagatacatcataatattgtctacctcaactttgacgaaattctag 3056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 14211598 - 14211675
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctagt 297  Q
    ||||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |  |||||||||||    
T  14211598 gttttgtcccatgtttgaatttaactaacactagatacatcataatattgtctccctcaactatgatgaaattctagt 14211675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 6552065 - 6551989
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattctag 296  Q
    |||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||| |||| |  ||||||||||    
T  6552065 gttttatctcatgtttgaatttaactgacactacatacatcataatattgtctccctcgactatgatgaaattctag 6551989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 312235 - 312160
Alignment:
Q  220 gttttatcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattcta 295  Q
    ||||||||||| |||||||||||||||||| || ||| || |||||||||| ||||||||||| | ||||||||||    
T  312235 gttttatcccacgtttgaatttaactgacaataaatacatcataatattgtatccctcaactatgacgaaattcta 312160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 20612 - 20687
Alignment:
Q  220 gttttatcccatgtttgaatttaactgac---actagatatattataatattgtctccctcaactagggcgaaatt 292  Q
    |||||||||||||||||||||||||||||   |||| ||| || |||||||||||||||||||||| | |||||||    
T  20612 gttttatcccatgtttgaatttaactgacactactacatacatcataatattgtctccctcaactatgacgaaatt 20687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 7939702 - 7939633
Alignment:
Q  226 tcccatgtttgaatttaactgacactagatatattataatattgtctccctcaactagggcgaaattcta 295  Q
    |||||||||||||||||||||||||  |||| || ||| |||| ||||| |||| || | ||||||||||    
T  7939702 tcccatgtttgaatttaactgacaccggatacatcatactattatctccttcaattatgacgaaattcta 7939633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University