View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_28 (Length: 348)
Name: NF1516_low_28
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 2886560 - 2886242
Alignment:
| Q |
12 |
acatcatcatagaaaactgagatcccagccctaacaataatcaagactacacccaaataatattaaataaaatcaaaatgcattataaatcactaatgaa |
111 |
Q |
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| T |
2886560 |
acatcattatagaaaactgagatcccagccctaacaataatcaagactacacccaaataatattaaataaaatcaaaatgcattataaatcactaatgaa |
2886461 |
T |
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| Q |
112 |
ctagttcaaacacataaaagtagcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgcggtaattcaacttcttgggtag |
211 |
Q |
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| T |
2886460 |
ctagttcaaacacataaaagtagcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgtggtaattcaacttcttgggtag |
2886361 |
T |
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| Q |
212 |
tgccatttgttgtgctgtcttctgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagttaatgaaatgtgtgcat |
311 |
Q |
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| T |
2886360 |
tgccatttgttgtgctgtcttctgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagtttatgaaatgtgcgcat |
2886261 |
T |
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| Q |
312 |
aagcataagaaacttaaat |
330 |
Q |
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| T |
2886260 |
aagcataagaaacttaaat |
2886242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 134 - 330
Target Start/End: Original strand, 2897983 - 2898179
Alignment:
| Q |
134 |
gcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgcggtaattcaacttcttgggtagtgccatttgttgtgctgtcttc |
233 |
Q |
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| T |
2897983 |
gcatgtttatattgagttttcatgaatggtatgaaaaagattcataacctatgcgcggtaattcaacttcttggagagtgccatttgttatgctgtcttc |
2898082 |
T |
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| Q |
234 |
tgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagttaatgaaatgtgtgcataagcataagaaacttaaat |
330 |
Q |
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| T |
2898083 |
tgattcttcatttatttttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagtcaatggcatatttgcataaccataagaaacttaaat |
2898179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 2876307 - 2876267
Alignment:
| Q |
233 |
ctgattcttcatttattgttgcttgtggcttgtcaaatgct |
273 |
Q |
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| T |
2876307 |
ctgattcttcttttattgtggcttgtggcttgtcaagtgct |
2876267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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