View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_30 (Length: 320)
Name: NF1516_low_30
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 5160872 - 5160584
Alignment:
| Q |
18 |
atgatgacagagtcaatttaatggcagcatgaattaagaattgcagaaaataaattggcgtctcgaatcaccaaaccttcagagttggttcaccgttatt |
117 |
Q |
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| T |
5160872 |
atgatgacagagtcaatttaatggcagcatgaattaagaattgcagaaaataaattggtgtctcgaatcaccaaaccttcagagttggttcaccgttatt |
5160773 |
T |
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| Q |
118 |
tgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgcagatttctcaaactcctcttgcctgcaatcaacaaataca |
217 |
Q |
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| T |
5160772 |
tgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgcagatttctcaaactcctcttgcctgcaatcaacaaataca |
5160673 |
T |
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| Q |
218 |
agttaatcaacagttacataaattataaattatcatcagtttgtcattaatcagtaaaataacatcataacagtatttaatgtcctttg |
306 |
Q |
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| T |
5160672 |
agttaatcaacagttacataaattataaattatcatcagtttgtcattaatcagtaaaataacatcataacagtatttaatgtcttttg |
5160584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 73 - 299
Target Start/End: Complemental strand, 5157515 - 5157299
Alignment:
| Q |
73 |
tggcgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcct |
172 |
Q |
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|||| ||| ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| |||| |
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| T |
5157515 |
tggcatcttgaatcaccaaacctttagagttggttcgccgtgatttgcgtttgcagcttgctttgccattcctttttgatgtgcacgtgcagctcgtcct |
5157416 |
T |
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| Q |
173 |
gctgcagatttctcaaactcctcttgcctgcaatcaacaaatacaagttaatcaacagttacataaattataaattatcatcagtttgtcattaatcagt |
272 |
Q |
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| T |
5157415 |
gctgcagatttctcaaagtcctcttgtctgcaatcaacacatacaagttaatcaatagttacataa----------atcatcaatttgtcattaaccagt |
5157326 |
T |
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| Q |
273 |
aaaataacatcataacagtatttaatg |
299 |
Q |
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| T |
5157325 |
acaataacatcataacagcatttaatg |
5157299 |
T |
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