View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_31 (Length: 318)
Name: NF1516_low_31
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 14191920 - 14191724
Alignment:
| Q |
50 |
attgtgtatttttattatgctactagatctacgagtgaggcaacaaatctcagcctaattaaggaccttcgtatcaatttccttggactgatttaactta |
149 |
Q |
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| T |
14191920 |
attgtgtattttttttatgctactagatctacgagtgaggcaacaaatctcagcctaattaaggaccttcgtatcaatttccttggactgatttaactta |
14191821 |
T |
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| Q |
150 |
ttaaagaaaagggactatcataaggnnnnnnnaactcccatgactttcatttctaagataaatatatatgagaccataaacaaataaagaaaatatg |
246 |
Q |
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| T |
14191820 |
ttaaagaaaagggactatcataaggtttttttaactcccatgactttcatttctaagataaatatatatgagaccataaacaaataaagaaaatatg |
14191724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 14192546 - 14192717
Alignment:
| Q |
1 |
ttttgttctatcatatatttcttgtatctactgttttttctcctattaaattgtgta--tttttattatgctactagatctacgagtgaggcaacaaatc |
98 |
Q |
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| T |
14192546 |
ttttgttctatcgtatatttcttggatctattgtttttcctcctattaaattgtgtattttttttttctgctagtagatctacgagggatgcaacaattc |
14192645 |
T |
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| Q |
99 |
tcagcctaattaaggaccttcgtatcaatttccttggactgatttaacttatt---aaagaaaagggactatcata |
171 |
Q |
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| T |
14192646 |
tcagc----ttaaggaccatcgaatcaatttccatggactgattcgacttcttaaaaaaaaaaagggactatcata |
14192717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 14209758 - 14209680
Alignment:
| Q |
1 |
ttttgttctatcatatatttcttgtatctactgttttttctcctattaaattgtgtatttttattatgctactagatcta |
80 |
Q |
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| T |
14209758 |
ttttgttctatcatatgtttcttggatctactgttttttctcctattaaattgtgtattttt-ttctgctactagatcta |
14209680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17536095 - 17536034
Alignment:
| Q |
1 |
ttttgttctatcatatatttcttgtatctactgttttttctcctattaaattgtgtattttt |
62 |
Q |
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| T |
17536095 |
ttttgttctatcatatatttcttagatctattattttttctcctattaaattgtgtaatttt |
17536034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17531783 - 17531721
Alignment:
| Q |
1 |
ttttgttctatcatatatttcttgtatctactgtttttt-ctcctattaaattgtgtattttt |
62 |
Q |
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| T |
17531783 |
ttttgatctatcatatatttcttagatctattatttttttctcctattaaattgtgtaatttt |
17531721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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