View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1516_low_33 (Length: 307)

Name: NF1516_low_33
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1516_low_33
NF1516_low_33
[»] chr3 (21 HSPs)
chr3 (17-307)||(55301686-55301976)
chr3 (89-300)||(49199254-49199465)
chr3 (88-307)||(6095389-6095604)
chr3 (89-276)||(43403530-43403713)
chr3 (88-300)||(43401586-43401797)
chr3 (89-307)||(54593867-54594086)
chr3 (139-307)||(46860638-46860804)
chr3 (139-307)||(36019012-36019178)
chr3 (137-303)||(30236293-30236458)
chr3 (139-307)||(41819363-41819527)
chr3 (115-302)||(31340042-31340222)
chr3 (131-303)||(47304419-47304591)
chr3 (137-303)||(46173525-46173688)
chr3 (223-284)||(40913483-40913544)
chr3 (89-149)||(4570210-4570272)
chr3 (223-306)||(4570117-4570202)
chr3 (149-286)||(5270557-5270689)
chr3 (92-172)||(34491480-34491557)
chr3 (88-172)||(40913566-40913647)
chr3 (139-172)||(5433786-5433819)
chr3 (83-123)||(9581619-9581658)
[»] chr4 (29 HSPs)
chr4 (88-306)||(40632609-40632826)
chr4 (89-300)||(2209886-2210096)
chr4 (87-307)||(50673636-50673852)
chr4 (139-304)||(41964582-41964743)
chr4 (87-307)||(41639589-41639803)
chr4 (138-307)||(12073556-12073721)
chr4 (139-307)||(379544-379710)
chr4 (140-300)||(55085286-55085439)
chr4 (138-307)||(35662604-35662767)
chr4 (223-307)||(6656119-6656203)
chr4 (184-306)||(33990010-33990131)
chr4 (227-307)||(8648302-8648382)
chr4 (227-305)||(8665573-8665651)
chr4 (197-303)||(26699337-26699442)
chr4 (232-307)||(46703665-46703740)
chr4 (219-303)||(54883188-54883273)
chr4 (224-303)||(26364404-26364483)
chr4 (223-298)||(27416886-27416961)
chr4 (139-280)||(46703739-46703879)
chr4 (89-172)||(6656222-6656305)
chr4 (89-164)||(50262487-50262559)
chr4 (199-303)||(12119708-12119815)
chr4 (88-173)||(21688538-21688621)
chr4 (248-298)||(3786135-3786185)
chr4 (139-207)||(54881566-54881629)
chr4 (191-293)||(32091618-32091719)
chr4 (222-293)||(33090058-33090129)
chr4 (138-172)||(41961691-41961725)
chr4 (88-147)||(48143362-48143418)
[»] chr6 (14 HSPs)
chr6 (89-307)||(17758187-17758402)
chr6 (87-307)||(17763154-17763371)
chr6 (89-307)||(26829909-26830128)
chr6 (139-307)||(26800751-26800917)
chr6 (89-307)||(5043791-5044006)
chr6 (89-307)||(21589094-21589308)
chr6 (101-307)||(22424626-22424830)
chr6 (113-284)||(3808518-3808685)
chr6 (142-307)||(2972777-2972944)
chr6 (223-284)||(603005-603066)
chr6 (89-164)||(602903-602975)
chr6 (200-303)||(9572760-9572862)
chr6 (274-307)||(21593827-21593860)
chr6 (248-292)||(25073754-25073798)
[»] chr1 (21 HSPs)
chr1 (108-307)||(37876573-37876771)
chr1 (89-307)||(13548792-13549005)
chr1 (105-284)||(37032873-37033050)
chr1 (89-307)||(11348861-11349080)
chr1 (139-307)||(28242468-28242635)
chr1 (86-307)||(13546883-13547094)
chr1 (139-307)||(47115336-47115502)
chr1 (131-307)||(29136411-29136585)
chr1 (142-307)||(37168461-37168622)
chr1 (142-307)||(31925553-31925712)
chr1 (106-307)||(47255148-47255344)
chr1 (138-296)||(34603737-34603894)
chr1 (139-307)||(7482064-7482235)
chr1 (227-291)||(19754673-19754737)
chr1 (223-291)||(19752862-19752930)
chr1 (243-303)||(12318463-12318523)
chr1 (219-300)||(42297888-42297971)
chr1 (89-172)||(19752952-19753032)
chr1 (106-162)||(19754772-19754826)
chr1 (197-303)||(6808621-6808726)
chr1 (140-173)||(6398927-6398960)
[»] chr7 (18 HSPs)
chr7 (89-307)||(4510339-4510553)
chr7 (89-307)||(4512181-4512395)
chr7 (91-307)||(4508499-4508711)
chr7 (89-298)||(34310496-34310711)
chr7 (141-307)||(3259158-3259322)
chr7 (89-307)||(32357848-32358059)
chr7 (139-307)||(8359157-8359320)
chr7 (139-284)||(2390472-2390615)
chr7 (102-286)||(2360784-2360960)
chr7 (139-303)||(29608904-29609060)
chr7 (194-303)||(22328282-22328390)
chr7 (223-307)||(48599255-48599339)
chr7 (107-303)||(6359762-6359952)
chr7 (89-172)||(30814690-30814770)
chr7 (101-172)||(22270241-22270310)
chr7 (134-171)||(22552448-22552485)
chr7 (89-156)||(6430432-6430496)
chr7 (181-284)||(1360051-1360154)
[»] chr8 (13 HSPs)
chr8 (89-307)||(11384148-11384366)
chr8 (142-307)||(40328939-40329102)
chr8 (180-307)||(4283687-4283813)
chr8 (137-307)||(18655563-18655734)
chr8 (139-303)||(3772359-3772521)
chr8 (89-307)||(42434779-42434996)
chr8 (223-298)||(40221917-40221992)
chr8 (223-306)||(2999723-2999806)
chr8 (223-303)||(10930118-10930199)
chr8 (183-306)||(10240288-10240411)
chr8 (85-132)||(4743023-4743069)
chr8 (89-143)||(4283819-4283872)
chr8 (240-277)||(9633551-9633588)
[»] scaffold0176 (1 HSPs)
scaffold0176 (89-307)||(17793-18008)
[»] chr2 (10 HSPs)
chr2 (90-307)||(45727092-45727305)
chr2 (87-307)||(35446675-35446889)
chr2 (143-303)||(42287953-42288111)
chr2 (144-298)||(17450749-17450898)
chr2 (88-303)||(1631520-1631733)
chr2 (139-275)||(7451314-7451448)
chr2 (222-306)||(33648337-33648421)
chr2 (181-284)||(30217923-30218026)
chr2 (201-284)||(42261384-42261464)
chr2 (85-147)||(29868182-29868241)
[»] scaffold0466 (1 HSPs)
scaffold0466 (89-307)||(7490-7703)
[»] chr5 (15 HSPs)
chr5 (89-252)||(40751195-40751351)
chr5 (89-307)||(5058208-5058423)
chr5 (176-303)||(27637487-27637613)
chr5 (89-252)||(40763200-40763356)
chr5 (223-307)||(40147424-40147508)
chr5 (89-307)||(27015686-27015896)
chr5 (137-307)||(213629-213800)
chr5 (181-306)||(16640818-16640944)
chr5 (102-164)||(28278592-28278652)
chr5 (220-306)||(316928-317014)
chr5 (89-164)||(38747281-38747353)
chr5 (86-171)||(40147531-40147613)
chr5 (220-295)||(4160775-4160850)
chr5 (87-144)||(13488517-13488571)
chr5 (241-283)||(30793320-30793362)
[»] scaffold0236 (1 HSPs)
scaffold0236 (138-306)||(10653-10820)
[»] scaffold0197 (1 HSPs)
scaffold0197 (197-286)||(1291-1379)
[»] scaffold0927 (1 HSPs)
scaffold0927 (140-192)||(3431-3482)
[»] scaffold0002 (1 HSPs)
scaffold0002 (201-284)||(490219-490299)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 55301686 - 55301976
Alignment:
Q  17 atataaagacttcagcttgaaggtaatgcatactttcactgccattgcattttctcttttttaatcaatttgtgttgtgaattccggactcaaatttcac 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301686 atataaagacttcaacttgaaggtaatgcatactttcactgccattgcattttctcttttttaatcaatttgtgttgtgaattccggactcaaatttcac 55301785  T
Q  117 accaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatcta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  55301786 accaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtgaataaaccacaagcaataaaaacaatctagatctaatcta 55301885  T
Q  217 gaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55301886 gaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacactaagaaatgttc 55301976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 49199254 - 49199465
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||    
T  49199254 tgttgtgaattc-ggtctcaaatttcacagcaatacaaattatatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaat-aaccacaa 49199351  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---ag 285  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||   ||    
T  49199352 gcaataacaacaatctagatctaatctagaaaa-caagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtagagaaaaatag 49199450  T
Q  286 ataacaacaccaaga 300  Q
    | |||||||||||||    
T  49199451 acaacaacaccaaga 49199465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 88 - 307
Target Start/End: Original strand, 6095389 - 6095604
Alignment:
Q  88 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 187  Q
    ||||||||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||| ||||||||| ||| |||||    
T  6095389 gtgttgtgaattcgggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataatcaaatgtaaataa-ccaca 6095485  T
Q  188 agcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagat 287  Q
    |||||||| |||||| ||||  || |||| ||| | ||||| |||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  6095486 agcaataacaacaatatagacctagtctataaa-cgaagtgtatagcaaaaccacaatccaaccaaggcataaacaagataaagagagtaaagaaaagat 6095584  T
Q  288 aacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||    
T  6095585 aacaacaccaagaaatgttc 6095604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 89 - 276
Target Start/End: Original strand, 43403530 - 43403713
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||||||||| |||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  43403530 tgttgtgaattccggactaaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataa-ccacaa 43403626  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagt 276  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  43403627 gcaataataacaatctagatctaatctagaaaac-aagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagt 43403713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 88 - 300
Target Start/End: Original strand, 43401586 - 43401797
Alignment:
Q  88 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 187  Q
    ||||||||||||  ||||||||||||||||||||||| || |||  ||  ||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  43401586 gtgttgtgaatttgggactcaaatttcacaccaataccaactat--gatctgtggagcaagtatcaatggcaaccaataaccaaatgtaaataa-ccaca 43401682  T
Q  188 agcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---a 284  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||||  ||||||  |||||||||||||||||||||||||||||| |||||   |    
T  43401683 agcaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaatcacaatctaaccaaaggataaacaagataaagagagtagagaaaaata 43401781  T
Q  285 gataacaacaccaaga 300  Q
    || |||||||||||||    
T  43401782 gacaacaacaccaaga 43401797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 54594086 - 54593867
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||| ||| | ||||||||    
T  54594086 tgttgtgaattcgggactcaaatttcacaccaatacaaactatatgatatgtagagcaagtatcaatgacaaccaataaccaaatataaat-aaccacaa 54593988  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattc-aaccaaaggataaacaagataaagagag--taaagaaaag 285  Q
    ||||||| || ||| |||| ||| ||||  |||||| |||||||||||| ||||||| | || ||| | |||||||||||||||||||  ||||||||||    
T  54593987 gcaataacaagaatatagacatagtcta-taaaccatgtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagactaaagaaaag 54593889  T
Q  286 ataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||    
T  54593888 ataacaacaccaagaaatgttc 54593867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 46860804 - 46860638
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| |||||| ||| || |||||| ||||  ||||||| ||| ||||||||||||||||     
T  46860804 gtggagcaaatatcaatggcaaccaataaccaaatgtaaataa-ccacaaacaacaacaacaatatagacctaatctataaa-ccaagtgcatagcaaaa 46860707  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46860706 ccacaatctaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaaaaaatgttc 46860638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 36019178 - 36019012
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    ||||||||||||||||| ||||||||||| ||||||||| | | |||||||||| || |||||||||||| ||||||||||||| |||||  || ||||     
T  36019178 gtggagcaagtatcaatcacaaccaataatcaaatgtaaatta-ccacaagcaacaataacaatctagatctaatctagaaaac-aagtgtttaacaaaa 36019081  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||||  |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  36019080 ccacaatctaaccaaaggataaacaagataaagagagtagaaaaaagataacaacaccaaaaaatgttc 36019012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 30236458 - 30236293
Alignment:
Q  137 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaa 236  Q
    |||||||||||||||||||| ||||||| |||||||  |   | |||||||||||| || |||||| ||||  || |||| ||| ||||||||||| |||    
T  30236458 gtgtggagcaagtatcaatgtcaaccaacaaccaaaaattgattaaccacaagcaacaacaacaatatagacctagtctataaa-ccaagtgcataacaa 30236360  T
Q  237 agccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaat 303  Q
    |  |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  30236359 aaacacaatccaaccaaggtataaacaagataaagagagtaaagaaaagataacaacaccaagaaat 30236293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 41819363 - 41819527
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    |||||||||||||||||| ||||||| ||||||    ||||||| ||||||||| || |||||| ||||  || || |  |||||||||||||||||||     
T  41819363 gtggagcaagtatcaatggcaaccaacaaccaa----aagtaaatcacaagcaacaacaacaatatagacctagtcca-taaaccaagtgcatagcaaaa 41819457  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaag-aaaagataacaacaccaagaaatgttc 307  Q
    |||||||  ||||||||||||||||||||||||| |||| || |||| ||||||||||||| ||||||||    
T  41819458 ccacaatctaaccaaaggataaacaagataaagaaagtagagaaaaaaataacaacaccaataaatgttc 41819527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 302
Target Start/End: Original strand, 31340042 - 31340222
Alignment:
Q  115 acaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatc 214  Q
    ||||||||||||| ||||  | |||||||||| ||||||||| ||||||| |||||||     ||||||||||||||| || || ||| ||||  || ||    
T  31340042 acaccaatacaaactata--atgtgtggagcatgtatcaatggcaaccaacaaccaaa-----gtaaaccacaagcaacaacaataatatagacctagtc 31340134  T
Q  215 tagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagag-taaagaaaagataacaacaccaagaaa 302  Q
    || ||| |||||||||||||||| ||||||| |||| || | |||||||||||||||| ||  ||||||||||||||||||||||||||    
T  31340135 tataaa-ccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataacaacaccaagaaa 31340222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 303
Target Start/End: Complemental strand, 47304591 - 47304419
Alignment:
Q  131 tatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgca 230  Q
    ||||| |||||||||||||||||||||||||||| |||||     ||||||| ||||||||| || || ||| ||||  || ||||  ||||||||||||    
T  47304591 tatgatgtgtggagcaagtatcaatgacaaccaacaacca-----aagtaaatcacaagcaacaacaataatatagacctagtcta-taaaccaagtgca 47304498  T
Q  231 tagcaaagccacaattcaaccaaaggataaacaagataaag------agagtaaagaaaagataacaacaccaagaaat 303  Q
    ||||||| ||||||| |||| || | |||||||||||||||      | || |||||||||||||||||||||| ||||    
T  47304497 tagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagaaaagataacaacaccaataaat 47304419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 46173688 - 46173525
Alignment:
Q  137 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagata--taatctagaaaaccaagtgcatagc 234  Q
    |||||||||||||||||||| ||||||| |||||||     ||||||||||||||| |  || ||| || | |  || |||| ||| |||||||||||||    
T  46173688 gtgtggagcaagtatcaatggcaaccaacaaccaaa-----gtaaaccacaagcaacagcaataatatataaacctattctataaa-ccaagtgcatagc 46173595  T
Q  235 aaagccacaattcaaccaaaggataaacaagataaagagag-taaagaaaagataacaacaccaagaaat 303  Q
    ||| ||||||| |||| ||   |||||||||||||||| ||  |||||||||||||||||||||||||||    
T  46173594 aaaaccacaatccaactaagaaataaacaagataaagaaagcaaaagaaaagataacaacaccaagaaat 46173525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 40913544 - 40913483
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 284  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||| || ||||||    
T  40913544 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagattagagaaaa 40913483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 4570272 - 4570210
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaatt--atatgaggtgtggagcaagt 149  Q
    |||||||||||| | ||||||||||||||||||||||||||  |||||| |||||||||||||    
T  4570272 tgttgtgaattctgaactcaaatttcacaccaatacaaattatatatgatgtgtggagcaagt 4570210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 4570202 - 4570117
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgtt 306  Q
    ||||||||||||||| ||||||| |||   ||||| |||||||||||||| ||| ||| ||||| |||||||||||||||||||||    
T  4570202 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgtt 4570117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 286
Target Start/End: Complemental strand, 5270689 - 5270557
Alignment:
Q  149 tatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaaca-atctagatataatctagaaaaccaagtgcatagcaaagccacaattc 247  Q
    |||||||||||||||||||| |||   ||  ||||||||||||| || || | |||||||| |||||||| || ||||||| |  ||||| |||||||      
T  5270689 tatcaatgacaaccaataacaaaa---aa--aaaccacaagcaacaacaatagatctagatctaatctagcaa-ccaagtgtaatgcaaaaccacaatcg 5270596  T
Q  248 aaccaaaggataaacaagataaagagagtaaagaaaaga 286  Q
    |||||||| ||||||| ||||||||||||| ||||||||    
T  5270595 aaccaaagaataaacatgataaagagagtagagaaaaga 5270557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 34491557 - 34491480
Alignment:
Q  92 tgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 172  Q
    ||||||||| |||||||||||| ||||||||||||| ||||  | ||||||||||||||| |||| ||||||| |||||||    
T  34491557 tgtgaattc-ggactcaaattttacaccaatacaaactata--atgtgtggagcaagtattaatggcaaccaacaaccaaa 34491480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 40913647 - 40913566
Alignment:
Q  88 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 172  Q
    ||||||||||||| ||||||||||||||||||||||||||  |||  | ||| |||||||||||||||| | ||||| |||||||    
T  40913647 gtgttgtgaattc-ggactcaaatttcacaccaatacaaacaata--atgtgcggagcaagtatcaatggcgaccaacaaccaaa 40913566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 5433786 - 5433819
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaa 172  Q
    ||||||||||||||||||||||||||||||||||    
T  5433786 gtggagcaagtatcaatgacaaccaataaccaaa 5433819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 9581658 - 9581619
Alignment:
Q  83 aatttgtgttgtgaattccggactcaaatttcacaccaata 123  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  9581658 aatttgtgttgtgaattccggactcaaa-atcacaccaata 9581619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 88 - 306
Target Start/End: Complemental strand, 40632826 - 40632609
Alignment:
Q  88 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 187  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||    
T  40632826 gtgttgtgaattccggactcaaattacacaccaatacaaactatatgatgtgtagagcaagtatcaatggcaaccaataaccaaatgtaaataaaccaca 40632727  T
Q  188 agcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagat 287  Q
    |||||||| |||||| ||||  || ||||  | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40632726 agcaataacaacaatatagacctagtcta-tataccaagtgcatggcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaaaaaaagat 40632628  T
Q  288 aacaacaccaagaaatgtt 306  Q
    |||||||||||||||||||    
T  40632627 aacaacaccaagaaatgtt 40632609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 2210096 - 2209886
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||| |||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  2210096 tgttgttaattccggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataa-ccacaa 2210000  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---ag 285  Q
     |||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||  ||||||| |||||||||||||||||||||| |||||   ||    
T  2209999 acaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaaccacaatctaaccaaatgataaacaagataaagagagtagagaaaaatag 2209901  T
Q  286 ataacaacaccaaga 300  Q
    | |||||||||||||    
T  2209900 acaacaacaccaaga 2209886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 87 - 307
Target Start/End: Original strand, 50673636 - 50673852
Alignment:
Q  87 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 186  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||  || |||||||||||||||||||| |||||||||||||||||||| | | |||     
T  50673636 tgtgttgtgaattccggactcaaattacacattaatacaaattat--gatgtgtggagcaagtatcaatgtcaaccaataaccaaatgtaaatca-ccat 50673732  T
Q  187 aagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaagaaaag 285  Q
    ||||||||| |||||| ||||| || |||| ||   ||||||||||||||| ||||||| |||   ||||| ||||||||||||||||||||||||||||    
T  50673733 aagcaataacaacaatatagatctagtctataat--caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagtaaagaaaag 50673830  T
Q  286 ataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||    
T  50673831 ataacaacaccaagaaatgttc 50673852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 304
Target Start/End: Complemental strand, 41964743 - 41964582
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    |||||||||||||||||| ||||||| || ||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||     
T  41964743 gtggagcaagtatcaatggcaaccaacaatcaaatgtaaataa-ccacaagcaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaa 41964646  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatg 304  Q
    |||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  41964645 ccacaatctaaccaaaggataaacaagata--gagagtaaagaaaagataacaacaccaagaaatg 41964582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 307
Target Start/End: Complemental strand, 41639803 - 41639589
Alignment:
Q  87 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 186  Q
    |||||||||||||| | |||||||||||||| ||||||||| |||  || |||||||||||||||||||| ||||||||||||||||||||    |||||    
T  41639803 tgtgttgtgaattcag-actcaaatttcacatcaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaa----accac 41639711  T
Q  187 aagcaataaaaaca---atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa 283  Q
    |||||| || ||     || ||||  || |||| ||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41639710 aagcaacaacaaatgatatatagacctagtctataat--caagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaagaaa 41639613  T
Q  284 agataacaacaccaagaaatgttc 307  Q
     |||||||||||||||||||||||    
T  41639612 cgataacaacaccaagaaatgttc 41639589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 138 - 307
Target Start/End: Complemental strand, 12073721 - 12073556
Alignment:
Q  138 tgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaa 237  Q
    ||||||||||||||||||| |||  || ||||||  | || |||||||||||||| || |||||||||||| ||||||||||| ||||||||||| ||||    
T  12073721 tgtggagcaagtatcaatggcaataaacaaccaa--ggaa-taaaccacaagcaacaacaacaatctagatctaatctagaaa-ccaagtgcataacaaa 12073626  T
Q  238 gccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
     |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12073625 accacaatctaaccaaagaataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 12073556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 379710 - 379544
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    ||||||||||||||| || |||||||||| ||||||||| ||| |||||| ||| || |||||| ||||  || |||| ||| ||||||||||| ||||     
T  379710 gtggagcaagtatcagtggcaaccaataatcaaatgtaaataa-ccacaaacaacaacaacaatatagacctagtctataaa-ccaagtgcataacaaaa 379613  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  379612 ccacaatctaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 379544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 140 - 300
Target Start/End: Original strand, 55085286 - 55085439
Alignment:
Q  140 tggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagc 239  Q
    ||||||||||||||||||||||||| || |||||       ||| ||||||||||| |||||||||||| |||| |||||| |||||||||||||||| |    
T  55085286 tggagcaagtatcaatgacaaccaacaatcaaatt------aactacaagcaataacaacaatctagatctaatttagaaa-ccaagtgcatagcaaaac 55085378  T
Q  240 cacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaaga 300  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  55085379 cacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaaga 55085439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 138 - 307
Target Start/End: Complemental strand, 35662767 - 35662604
Alignment:
Q  138 tgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaa 237  Q
    ||||||||||||||||||| ||||||| |||||||  |||     ||| |||||| || |||||| |||| ||| |||| ||| ||||||||||||||||    
T  35662767 tgtggagcaagtatcaatggcaaccaacaaccaaaattaa-----ccataagcaacaacaacaatatagacatagtctataaa-ccaagtgcatagcaaa 35662674  T
Q  238 gccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
     ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35662673 accacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaaaaaatgttc 35662604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 6656203 - 6656119
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6656203 caagtgcatagcaaaaccacaatccaacaaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 6656119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 33990131 - 33990010
Alignment:
Q  184 cacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa 283  Q
    ||||||||| || |||||||||||| ||||||||||| |||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||| | |||    
T  33990131 cacaagcaacaacaacaatctagatctaatctagaaa-ccaagtgcatagcaaatccagaattgaaccaaagaataaacaagataaagagagtagaaaaa 33990033  T
Q  284 agataacaacaccaagaaatgtt 306  Q
    | |||| ||||||||||||||||    
T  33990032 atataataacaccaagaaatgtt 33990010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 8648382 - 8648302
Alignment:
Q  227 tgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    ||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8648382 tgcatagcaaaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 8648302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 8665651 - 8665573
Alignment:
Q  227 tgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgt 305  Q
    ||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8665651 tgcatagcaaaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgt 8665573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 26699337 - 26699442
Alignment:
Q  197 aacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacacc 296  Q
    |||||||||||| ||||||||||  |||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||||  |||     
T  26699337 aacaatctagatctaatctagaat-ccaagtgcatagcaaaaccataattgaaccaaagaataaacaagataaagagagtaaagaaaagataacggcact 26699435  T
Q  297 aagaaat 303  Q
    |||||||    
T  26699436 aagaaat 26699442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 46703740 - 46703665
Alignment:
Q  232 agcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46703740 agcaaaaccacaatctaaccaaatgataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 46703665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 54883273 - 54883188
Alignment:
Q  219 aaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaag-aaaagataacaacaccaagaaat 303  Q
    ||||||| |||| |||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  54883273 aaaccaaatgcagagcaaaaccacaattcaaccaaagaataaataagataaagagagtaaagaaaaagataacaacaccaagaaat 54883188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 26364483 - 26364404
Alignment:
Q  224 aagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaat 303  Q
    ||||| |||||||| ||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  26364483 aagtgtatagcaaaaccacaatccaagcaaggaataaacaagataaagagagtaaagaaaagataacaacaccaagaaat 26364404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 27416886 - 27416961
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 298  Q
    ||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  27416886 caagtgcatggcaaaaccacaatccaaccaaagaataaacaagataaagagagtaaagacaagataacaacaccaa 27416961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 46703879 - 46703739
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaa 236  Q
    |||||| |||||||||| ||||||||||||||||||||| ||| || ||||||| || |||||| || | |  || |||| ||   ||||||||||||||    
T  46703879 gtggagtaagtatcaataacaaccaataaccaaatgtaaataa-cctcaagcaacaacaacaatatatagacctattctataat--caagtgcatagcaa 46703783  T
Q  237 agccacaattcaaccaaaggataaacaagataaagagagtaaag 280  Q
    | |||||||  |||||||||||||||||||||||||||||||||    
T  46703782 aaccacaatctaaccaaaggataaacaagataaagagagtaaag 46703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 6656305 - 6656222
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 172  Q
    ||||||||||||||||||||||||||||| ||||| | |   ||||| ||||||||||||||||||||||| |||| |||||||    
T  6656305 tgttgtgaattccggactcaaatttcacatcaataaacaaactatgatgtgtggagcaagtatcaatgacatccaacaaccaaa 6656222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 50262487 - 50262559
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaa 164  Q
    |||||||||||| | |||||||||||||||||||||||| |||  || ||||||||||||||||||||||||||||    
T  50262487 tgttgtgaattcag-actcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaa 50262559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 12119815 - 12119708
Alignment:
Q  199 caatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa----agataacaaca 294  Q
    |||||||||| ||||||||||| | |||||||||||||| |||||||   |||||||  |||||||||||||||||||| |||||    |||| ||||||    
T  12119815 caatctagatctaatctagaaa-ctaagtgcatagcaaaaccacaatcggaccaaagactaaacaagataaagagagtagagaaaaaatagatgacaaca 12119717  T
Q  295 ccaagaaat 303  Q
    |||||||||    
T  12119716 ccaagaaat 12119708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 21688621 - 21688538
Alignment:
Q  88 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaat 173  Q
    |||||||||||| || |||||||||| |||| |||||||| |||  || |||||||||||||||||||||||| ||| ||| ||||    
T  21688621 gtgttgtgaatttcgaactcaaattttacactaatacaaactat--gatgtgtggagcaagtatcaatgacaatcaacaactaaat 21688538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 3786185 - 3786135
Alignment:
Q  248 aaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 298  Q
    |||||||| || |||||||||||||||||| |||||||| |||||||||||    
T  3786185 aaccaaagaatgaacaagataaagagagtagagaaaagagaacaacaccaa 3786135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 54881629 - 54881566
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctaga 207  Q
    |||||||||||||||||||||||||| |||||     || ||||||||||||||||| |||||| ||||    
T  54881629 gtggagcaagtatcaatgacaaccaacaacca-----aaataaaccacaagcaataacaacaatataga 54881566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 32091719 - 32091618
Alignment:
Q  191 aataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaag-aaaagataa 289  Q
    ||||| |||||| ||||| |||||||| |||| ||||| | || ||| |||||||| ||| |||| ||||||||||||||||| ||| || |||||||||    
T  32091719 aataacaacaatttagatctaatctagcaaac-aagtgtaaagaaaa-ccacaattgaactaaagaataaacaagataaagagcgtagagaaaaagataa 32091622  T
Q  290 caac 293  Q
    ||||    
T  32091621 caac 32091618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 33090129 - 33090058
Alignment:
Q  222 ccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaac 293  Q
    ||||||| | |||||| |||||||  |||||||  ||||||||||||||||||| | |||||||| ||||||    
T  33090129 ccaagtgtaaagcaaaaccacaatcgaaccaaaaaataaacaagataaagagagcagagaaaagagaacaac 33090058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 41961725 - 41961691
Alignment:
Q  138 tgtggagcaagtatcaatgacaaccaataaccaaa 172  Q
    ||||| |||||||||||||||||||||||||||||    
T  41961725 tgtggggcaagtatcaatgacaaccaataaccaaa 41961691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 48143418 - 48143362
Alignment:
Q  88 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaa 147  Q
    |||||||||||||||||||||||  |||||||||||||||   ||||| |||||||||||    
T  48143418 gtgttgtgaattccggactcaaa-atcacaccaatacaaa--ctatgatgtgtggagcaa 48143362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 17758402 - 17758187
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||| || |||    
T  17758402 tgttgtgaattcgggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataa-ccgcaa 17758306  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagt-aaagaaaagat 287  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||| || |||| ||||||    
T  17758305 gcaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagcgtaaaaggaaagat 17758207  T
Q  288 aacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||    
T  17758206 aacaacaccaagaaatgttc 17758187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 87 - 307
Target Start/End: Complemental strand, 17763371 - 17763154
Alignment:
Q  87 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 186  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||  || ||||||||||||||||||||||||||||||||||||||||| | || |||    
T  17763371 tgtgttgtgaattcgggactcaaatttcacaccaatataaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaat-aatcac 17763275  T
Q  187 aagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagt-aaagaaaag 285  Q
    || |||||| |||||||||||| ||||||||| || ||||||||||||||| | |||||  ||||||||||| ||||||||||||||||| |||||||||    
T  17763274 aaacaataacaacaatctagatctaatctagataa-caagtgcatagcaaaactacaatctaaccaaaggatgaacaagataaagagagtaaaagaaaag 17763176  T
Q  286 ataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||    
T  17763175 ataacaacaccaagaaatgttc 17763154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 26829909 - 26830128
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||| | ||||||||    
T  26829909 tgttgtgaattcggggctcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatggaaaccaataaccaaatgtaaat-aaccacaa 26830007  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattc-aaccaaaggataaacaagataa--agagagtaaagaaaag 285  Q
    ||||||| |||||| || |  || ||||  ||||||||||||||||||| ||||||| | || ||| | |||||||||||||  ||||||||||||||||    
T  26830008 gcaataacaacaatataaacctagtcta-taaaccaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaag 26830106  T
Q  286 ataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||    
T  26830107 ataacaacaccaagaaatgttc 26830128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 26800917 - 26800751
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    |||||||||||||||||| |||||||||||||||||||| | | ||||||||||||| |||||||||||| || |||||||||| ||||||||||||||     
T  26800917 gtggagcaagtatcaatggcaaccaataaccaaatgtaaatta-ccacaagcaataacaacaatctagatctagtctagaaaac-aagtgcatagcaaaa 26800820  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||||  ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  26800819 ccacaatctaaccaaaagataaacaagataaaaagagtagagaaaagataacaacaccaagaaatgttc 26800751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 5044006 - 5043791
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    ||||||||||||| |||| |||||||||||||||||||| |||  || |||||||||| |||||||||||||||||||||||||||||| ||| || |||    
T  5044006 tgttgtgaattcctgacttaaatttcacaccaatacaaactat--gatgtgtggagcacgtatcaatgacaaccaataaccaaatgtaaataa-cctcaa 5043910  T
Q  189 gcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 286  Q
    |||| || |||||| || | |  || |||| ||   ||||||||||||||| ||||||| |||||||   ||||||||||||||||||||||||||||||    
T  5043909 gcaacaacaacaatatatagacctattctataat--caagtgcatagcaaaaccacaatccaaccaagaaataaacaagataaagagagtaaagaaaaga 5043812  T
Q  287 taacaacaccaagaaatgttc 307  Q
    |||||||||||||||||||||    
T  5043811 taacaacaccaagaaatgttc 5043791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 21589308 - 21589094
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| |||||||||||||||||||||| ||| |||  || ||||||||||||||||||||  |||||| |||||||   | || ||||||||    
T  21589308 tgttgtgaattctggactcaaatttcacaccaatataaactat--gatgtgtggagcaagtatcaatggaaaccaacaaccaaaaa-atgttaaccacaa 21589212  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 288  Q
    ||||||| |||||| ||||  || |||| ||| |||||||||||||||| ||||||| |||| || | ||||||||||||| || |||||||||||||||    
T  21589211 gcaataacaacaatatagacctagtctataaa-ccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaggaaagtaaagaaaagata 21589113  T
Q  289 acaacaccaagaaatgttc 307  Q
    |||||||||||||||||||    
T  21589112 acaacaccaagaaatgttc 21589094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 101 - 307
Target Start/End: Original strand, 22424626 - 22424830
Alignment:
Q  101 cggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaaca 200  Q
    |||||||||||||||||  |||||||| |||  || ||||||||||||||||||||  ||||||||||||||||||| ||| |||||| ||| || ||||    
T  22424626 cggactcaaatttcacattaatacaaactat--gatgtgtggagcaagtatcaatggtaaccaataaccaaatgtaaataa-ccacaaacaacaacaaca 22424722  T
Q  201 atctagatataatctagaaaaccaagtgcatagcaaag--ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 298  Q
    |||||||| |||| |||||| |||||||||| | |||   |||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  22424723 atctagatctaatatagaaa-ccaagtgcattgaaaaaaaccacaatctaacctaaggataaacaagataaagagagtagagaaaagataacaacaccaa 22424821  T
Q  299 gaaatgttc 307  Q
    |||||||||    
T  22424822 gaaatgttc 22424830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 3808518 - 3808685
Alignment:
Q  113 tcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataa 212  Q
    ||||||||||||||| |||  ||  ||||||||||||||||||| |||||||||| ||||||||| ||| ||| ||||||||  |||||||||||| |||    
T  3808518 tcacaccaatacaaactat--gatatgtggagcaagtatcaatggcaaccaataatcaaatgtaaataa-ccaaaagcaatagcaacaatctagatctaa 3808614  T
Q  213 tctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 284  Q
    |||||||||| || ||||||||||| ||| |||  |||||||||||||||||||||||||||||| ||||||    
T  3808615 tctagaaaacaaa-tgcatagcaaaaccataatctaaccaaaggataaacaagataaagagagtagagaaaa 3808685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 2972777 - 2972944
Alignment:
Q  142 gagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatag-caaagcc 240  Q
    ||||||||||||||| |||||||||| ||||||||| | |||||||| ||| || |||||| ||||  || ||||  |||| ||||||||||  ||| ||    
T  2972777 gagcaagtatcaatggcaaccaataatcaaatgtaaat-aaccacaaacaacaacaacaatatagacctagtcta-taaactaagtgcatagaaaaaacc 2972874  T
Q  241 acaattcaaccaaaggataaacaagat----aaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||  ||||||| ||||||||||||    | |||||||||| |||| ||||||||||||||||||||||    
T  2972875 acaatctaaccaaatgataaacaagatatagagagagagtaaa-aaaaaataacaacaccaagaaatgttc 2972944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 603005 - 603066
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 284  Q
    ||||||||||| ||| ||||||| ||||||| | ||||||||||||||||||||| ||||||    
T  603005 caagtgcatagtaaaaccacaatccaaccaaggcataaacaagataaagagagtagagaaaa 603066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 602903 - 602975
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaa 164  Q
    |||||||||||| |||||||||  ||||||||||||||| |||  || |||||||||||||||||||| |||||||    
T  602903 tgttgtgaattc-ggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaa 602975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 9572862 - 9572760
Alignment:
Q  200 aatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaag 299  Q
    ||||||||| ||||||||||| |||||||||||| ||  |||||||  || ||||| ||| | |||||||||| |  | |||||||||||||||| ||||    
T  9572862 aatctagatctaatctagaaa-ccaagtgcatagaaataccacaatcgaatcaaagaatagataagataaagacacgagagaaaagataacaacatcaag 9572764  T
Q  300 aaat 303  Q
    ||||    
T  9572763 aaat 9572760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 21593860 - 21593827
Alignment:
Q  274 agtaaagaaaagataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||||||||||||||    
T  21593860 agtaaagaaaagataacaacaccaagaaatgttc 21593827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 25073798 - 25073754
Alignment:
Q  248 aaccaaaggataaacaagataaagagagtaaagaaaagataacaa 292  Q
    |||||||| ||||||||||||||||||| | |||||||| |||||    
T  25073798 aaccaaagaataaacaagataaagagagcagagaaaagagaacaa 25073754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 108 - 307
Target Start/End: Original strand, 37876573 - 37876771
Alignment:
Q  108 aaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctaga 207  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||| | ||||    
T  37876573 aaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaagcaaaaacaacactataga 37876672  T
Q  208 tataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
      || |||| ||| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37876673 cctagtctataaa-ccaagtgcatagaaaaaccacaattcaaccaaatgataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 37876771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 13548792 - 13549005
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||     |||||||||||    
T  13548792 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatgacaaccaacaaccaaa-----gtaaaccacaa 13548886  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 288  Q
    |||| || || ||| ||||  || |||| ||| | |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  13548887 gcaacaacaataatatagacctagtctataaaccaaagtgcatagcaaaaccacaatccaaccaaagaataaacaagataaagagagtaaagaaaagata 13548986  T
Q  289 acaacaccaagaaatgttc 307  Q
    |||||||||||||||||||    
T  13548987 acaacaccaagaaatgttc 13549005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 105 - 284
Target Start/End: Original strand, 37032873 - 37033050
Alignment:
Q  105 ctcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatct 204  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||    
T  37032873 ctcaaatttcacaacaatacaaactatatgatgtgtggagcaaatatcaatggcaaccaataaccaaatgtaaat-aaccacaagcaataacaacaatct 37032971  T
Q  205 agatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 284  Q
    |||| |||||||||||| |||||||||||||||  |||| |  |||||||||||||||||||||||||||||| ||||||    
T  37032972 agatctaatctagaaaa-caagtgcatagcaaaatcacactctaaccaaaggataaacaagataaagagagtagagaaaa 37033050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 11349080 - 11348861
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||  ||||| ||||||||| | ||||||||    
T  11349080 tgttgtgaattcgggactcaaattttacaccaatacaaactatatgatgtgtggagcaagtatcaatgacaattaataatcaaatgtaaat-aaccacaa 11348982  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattc-aaccaaaggataaacaagataa--agagagtaaagaaaag 285  Q
    ||||||| |||||| ||||  || ||||  ||||||||||||||||||| ||||||| | || ||| | |||||||||||||  ||||||||||||||||    
T  11348981 gcaataacaacaatatagacctagtcta-taaaccaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaag 11348883  T
Q  286 ataacaacaccaagaaatgttc 307  Q
    ||||||||| ||||||||||||    
T  11348882 ataacaacatcaagaaatgttc 11348861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 28242635 - 28242468
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||||||| || |||||||||||| |||| |||||| ||||||| ||||||||     
T  28242635 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataa-cctcaagcaacaacaacaatctagatctaatttagaaa-ccaagtgaatagcaaaa 28242538  T
Q  239 -ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
     |||||||  ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28242537 accacaatctaacaaaatgataaacaagataaagagagtagagaaaagataacaacaccaagaaatgttc 28242468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 13546883 - 13547094
Alignment:
Q  86 ttgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaacca 185  Q
    ||||||||||||||| || |||||||||| |||||||||||| ||||| | |||||||||||||||||||| ||||||| |||||||     ||||||||    
T  13546883 ttgtgttgtgaattc-ggtctcaaatttctcaccaatacaaactatataatgtgtggagcaagtatcaatggcaaccaacaaccaaa-----gtaaacca 13546976  T
Q  186 caagcaataaaaacaatctaga--tataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa 283  Q
    ||||||| || || ||| ||||  |||| | || ||| |||||||||     || ||||||| ||||||||| |||||||||||||||||||||||||||    
T  13546977 caagcaacaacaataatatagacctatagtttataaa-ccaagtgca-----aaaccacaatccaaccaaagaataaacaagataaagagagtaaagaaa 13547070  T
Q  284 agataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||||    
T  13547071 agataacaacaccaagaaatgttc 13547094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 139 - 307
Target Start/End: Complemental strand, 47115502 - 47115336
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    |||||||||||||||||||||| ||| || ||||||||| ||| | ||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||     
T  47115502 gtggagcaagtatcaatgacaatcaacaatcaaatgtaaataatc-acaagcaataacaacaatctagatctaatctagaaaac-aagtgcataacaaaa 47115405  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||||  ||| ||||||||||||||||||| |||| | |||||||||||||||| ||||||||||||    
T  47115404 ccacaatctaacaaaaggataaacaagataaaaagagcagagaaaagataacaacatcaagaaatgttc 47115336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 307
Target Start/End: Complemental strand, 29136585 - 29136411
Alignment:
Q  131 tatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgca 230  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||| |||||  ||||  || |||| ||| |||||||||    
T  29136585 tatgatgtgtggagcaagtaccaatgacaaccaataaccaaatataactaa-ccacaagcaataacaacaaaatagacctagtctataaa-ccaagtgca 29136488  T
Q  231 tagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata-acaacaccaagaaatgttc 307  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||    
T  29136487 tagcaaaaccacaatctaaccaaaggataaacaagataaagagagtagagaaaa-atagacagcaccaagaaatgttc 29136411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 37168622 - 37168461
Alignment:
Q  142 gagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagcca 241  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| || || | | ||||  || |||| ||   ||||||||||||||| |||    
T  37168622 gagcaagtatcaatgacaaccaataaccaaatgtaaataa-cctcaagcaacaacaata-tatagacctagtctataat--caagtgcatagcaaaacca 37168527  T
Q  242 caattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    ||||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37168526 caatcaaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 37168461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 31925553 - 31925712
Alignment:
Q  142 gagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagcca 241  Q
    ||||||||||||||||||||||| ||||||||       ||||||||||||||| || ||| ||||  || |||| ||| |||||||||||||||| |||    
T  31925553 gagcaagtatcaatgacaaccaacaaccaaatt------aaccacaagcaataacaataatatagacctagtctataaa-ccaagtgcatagcaaaacca 31925645  T
Q  242 caattcaaccaaaggataa-acaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||| ||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||    
T  31925646 caatccaaccaaagaataatacaagataacgagagtaaagaaaaaataacaacaccaagaaatgttc 31925712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 106 - 307
Target Start/End: Original strand, 47255148 - 47255344
Alignment:
Q  106 tcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatcta 205  Q
    |||||||||||||||||| |||   ||||| |||||||||| ||||||||| ||||||| |||||     |||||||||| |||||| || || ||| ||    
T  47255148 tcaaatttcacaccaatataaa--ctatgatgtgtggagcaggtatcaatggcaaccaacaacca-----aagtaaaccataagcaacaacaataatata 47255240  T
Q  206 gatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaa---agaaaagataacaacaccaagaaa 302  Q
    ||  || ||||  ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||   | |||| |||||||||||||||||    
T  47255241 gacctagtcta-taaaccaagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtaaaagaaaaaaaataacaacaccaagaaa 47255339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 296
Target Start/End: Complemental strand, 34603894 - 34603737
Alignment:
Q  138 tgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagata--taatctagaaaaccaagtgcatagca 235  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| || ||||||  || | |||| || | |  || |||| ||   |||||||||||||    
T  34603894 tgtggagcaagtatcaatgacaaccaataatcaaatgtaaataa-cctcaagcaccaacagcaatatatagacctagtctataat--caagtgcatagca 34603798  T
Q  236 aagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacacc 296  Q
    || ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  34603797 aaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacacc 34603737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 7482064 - 7482235
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaa---ccacaagcaataaaaacaatctagata--taatctagaaaaccaagtgcatag 233  Q
    |||||||||||||||||||||||||||||||||||  | |||||   || ||||||| || |||||| || | |  || |||| ||   |||||||||||    
T  7482064 gtggagcaagtatcaatgacaaccaataaccaaattaatgtaaataacctcaagcaacaacaacaatatatagacctagtctataat--caagtgcatag 7482161  T
Q  234 caaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||| ||||||| ||||||| | ||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  7482162 caaaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaaagatgacaataccatgaaatgttc 7482235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 19754737 - 19754673
Alignment:
Q  227 tgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataaca 291  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  19754737 tgcatagcaaaaccacaatccaacaaaaggataaacaagataaagagagtaaagaaaagataaca 19754673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 19752930 - 19752862
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataaca 291  Q
    ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  19752930 caagtgcatagtaaaaccacaatccaacaaaaggataaacaagataaagagagtaaataaaagataaca 19752862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 12318463 - 12318523
Alignment:
Q  243 aattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaat 303  Q
    |||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  12318463 aattgaaccaaagaataaacaagataaagggagtaaagaaaagagaacaacaccaaaaaat 12318523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 42297888 - 42297971
Alignment:
Q  219 aaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---agataacaacaccaaga 300  Q
    |||||||||||||||||||  |||||| ||||||||  |||||||||||||| ||||||||||||   ||| |||||||||||||    
T  42297888 aaaccaagtgcatagcaaaatcacaatccaaccaaataataaacaagataaa-agagtaaagaaaaatagacaacaacaccaaga 42297971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 19753032 - 19752952
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 172  Q
    |||||||||||| | ||||||||||||||||||||||||   ||||| ||| | |||||||||||||| ||||||| |||||||    
T  19753032 tgttgtgaattcag-actcaaatttcacaccaatacaaa--ctatgatgtgcgaagcaagtatcaatggcaaccaacaaccaaa 19752952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 19754826 - 19754772
Alignment:
Q  106 tcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaacc 162  Q
    |||||||||||||||||| ||| |||  || ||||||||||||||||||||||||||    
T  19754826 tcaaatttcacaccaatagaaactat--gatgtgtggagcaagtatcaatgacaacc 19754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 303
Target Start/End: Complemental strand, 6808726 - 6808621
Alignment:
Q  197 aacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacacc 296  Q
    |||||||||||| | ||||||||| ||||||| | ||||||  ||| ||  ||| |||| ||||||||||||||||||||| | || | | |||||| ||    
T  6808726 aacaatctagatctgatctagaaa-ccaagtgtaaagcaaaatcactatcaaactaaagcataaacaagataaagagagtagaaaacaaagaacaactcc 6808628  T
Q  297 aagaaat 303  Q
    |||||||    
T  6808627 aagaaat 6808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 6398960 - 6398927
Alignment:
Q  140 tggagcaagtatcaatgacaaccaataaccaaat 173  Q
    ||||||||||||||||| ||||||||||||||||    
T  6398960 tggagcaagtatcaatggcaaccaataaccaaat 6398927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 4510339 - 4510553
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  4510339 tgttgtgaattc-ggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaa 4510435  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 288  Q
    ||||||| |||||| ||||  || |||| ||| | ||||||||||||||  ||||||||||| || ||||||||||||| ||||||||||||||||||||    
T  4510436 gcaataacaacaatatagacctagtctataaatc-aagtgcatagcaaaaacacaattcaactaatggataaacaagatcaagagagtaaagaaaagata 4510534  T
Q  289 acaacaccaagaaatgttc 307  Q
    |||||||||||||||||||    
T  4510535 acaacaccaagaaatgttc 4510553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 4512181 - 4512395
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  4512181 tgttgtgaattc-ggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaa 4512277  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 288  Q
    ||||||| |||||| ||||  || |||| ||| | ||||||||||||||  ||||||||||| || ||||||||||||| ||||||||||||||||||||    
T  4512278 gcaataacaacaatatagacctagtctataaatc-aagtgcatagcaaaaacacaattcaactaatggataaacaagatcaagagagtaaagaaaagata 4512376  T
Q  289 acaacaccaagaaatgttc 307  Q
    |||||||||||||||||||    
T  4512377 acaacaccaagaaatgttc 4512395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 91 - 307
Target Start/End: Original strand, 4508499 - 4508711
Alignment:
Q  91 ttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagc 190  Q
    |||||||||| || ||||||||||||||||||||||| |||  || || || |||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  4508499 ttgtgaattc-ggtctcaaatttcacaccaatacaaactat--gaagtatgaagcaagtatcaatgccaaccaataaccaaatataaataaaccacaagc 4508595  T
Q  191 aataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataac 290  Q
    ||||| |||||| ||||  || |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4508596 aataacaacaatatagacctagtctataaa-ccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaagaaaatataac 4508694  T
Q  291 aacaccaagaaatgttc 307  Q
    |||||||||||||||||    
T  4508695 aacaccaagaaatgttc 4508711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 89 - 298
Target Start/End: Original strand, 34310496 - 34310711
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaat------tatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaa 182  Q
    |||||||||||||||| ||||| ||||||||||||||| |      ||||||| ||||||||||||||||||||||||||||||||||||||||| || |    
T  34310496 tgttgtgaattccggattcaaagttcacaccaatacaattacaaactatatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataga 34310595  T
Q  183 ccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagg-ataaacaagataaagagagtaaaga 281  Q
    ||||||||||||| |||||| ||||  || ||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  34310596 ccacaagcaataacaacaatatagacctagtcta-taaaccaagtgcatagcaaaaccacaattcaaccaaaggaataaacaagataaagagagtaaaga 34310694  T
Q  282 aaagataacaacaccaa 298  Q
    |||||||||||||||||    
T  34310695 aaagataacaacaccaa 34310711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 141 - 307
Target Start/End: Complemental strand, 3259322 - 3259158
Alignment:
Q  141 ggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagcc 240  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| | | |||||||||| ||    
T  3259322 ggagcaagtatcaatgacaaccaataaccaaatgtaaataa-ccacaagcaataacaacaatctagatctaatctagaaaac-acgggcatagcaaaacc 3259225  T
Q  241 acaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3259224 acaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaggaaatgttc 3259158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 32357848 - 32358059
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||     |||||||||||    
T  32357848 tgttgtgaattc-ggacacaaatttcacaccaatacaaattatatgatgtgtggagtaagtatcaatgacaaccaacaaccaaa-----gtaaaccacaa 32357941  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 288  Q
    |||| || || ||| ||||  || | ||  || |||| |||||| |||| ||||||||||| ||| | ||||||||| ||||||||||||||||||||||    
T  32357942 gcaacaacaataatatagacctagttta-taatccaattgcataacaaaaccacaattcaagcaaggaataaacaagttaaagagagtaaagaaaagata 32358040  T
Q  289 acaacaccaagaaatgttc 307  Q
    |||||||||||||||||||    
T  32358041 acaacaccaagaaatgttc 32358059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 8359157 - 8359320
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    |||||||||||||||||| ||||||| || ||||    |||||| ||||||||| || |||||||||||| ||||||||||||| ||||||||||||||     
T  8359157 gtggagcaagtatcaatggcaaccaacaatcaaa----agtaaatcacaagcaacaacaacaatctagatctaatctagaaaac-aagtgcatagcaaaa 8359251  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||||  |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  8359252 ccacaatctaaccaaaggataaacaagataatgagagtagagaaaagataacaacaccaagaaatgttc 8359320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 139 - 284
Target Start/End: Complemental strand, 2390615 - 2390472
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||| ||||||||||||| || || ||||||||     
T  2390615 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataa-ccacaatcaataacaacaatctagatctaatctagaaaacaaa-tgtatagcaaaa 2390518  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 284  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  2390517 ccacaatccaacaaaaggataaacaagataaagagagtagagaaaa 2390472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 102 - 286
Target Start/End: Original strand, 2360784 - 2360960
Alignment:
Q  102 ggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaa 201  Q
    ||||||||| |||||||||||||||| |||  || |||||||||||||||||||| ||||||| |||||||     ||||| ||||||||| || | |||    
T  2360784 ggactcaaaattcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaacaaccaaa-----gtaaatcacaagcaacaacatcaa 2360876  T
Q  202 tctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 286  Q
    | ||||  || |||||||| ||||||||||| |||| ||||||||||||||| | |||||||||||||||||| |||||||||||    
T  2360877 tatagacctagtctagaaa-ccaagtgcatatcaaaaccacaattcaaccaaggaataaacaagataaagagaataaagaaaaga 2360960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 139 - 303
Target Start/End: Complemental strand, 29609060 - 29608904
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    ||||||||||||||||||||||||||       |||||| ||| |||||||||| || |||||||||||| |||| |||||| ||||||||||| ||||     
T  29609060 gtggagcaagtatcaatgacaaccaa-------atgtaaataa-ccacaagcaacaacaacaatctagatctaatatagaaa-ccaagtgcatatcaaaa 29608970  T
Q  239 -ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaat 303  Q
     |||||||  || ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29608969 accacaatctaagcaaaggataaacaagataaagagagtagagaaaagataacaacaccaagaaat 29608904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 303
Target Start/End: Original strand, 22328282 - 22328390
Alignment:
Q  194 aaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaac 293  Q
    ||||||||||||||| ||||| ||||| ||||||||||| |||| |||||||  ||| |||| ||||||||||||||||||||| |||||||||||||||    
T  22328282 aaaaacaatctagatctaatcgagaaa-ccaagtgcataacaaaaccacaatcgaacaaaagaataaacaagataaagagagtagagaaaagataacaac 22328380  T
Q  294 accaagaaat 303  Q
    ||||| ||||    
T  22328381 accaaaaaat 22328390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 48599255 - 48599339
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||||| |||||| | ||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48599255 caagtgcacagcaaaactacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacatcaagaaatgttc 48599339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 303
Target Start/End: Original strand, 6359762 - 6359952
Alignment:
Q  107 caaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctag 206  Q
    |||| |||||| ||||||||| |||  || ||||||||||||||||||||  |||||| |||||     ||||||||||||||||| || || ||| ||     
T  6359762 caaacttcacatcaatacaaactat--gatgtgtggagcaagtatcaatgggaaccaacaacca-----aagtaaaccacaagcaacaacaataatatat 6359854  T
Q  207 atataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagg-ataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaat 303  Q
    |  || ||||  ||||||||||||||||||| ||||||| ||||  |||| |||||||||||||||| || ||| ||||||||||||||||||||||||    
T  6359855 acctagtcta-taaaccaagtgcatagcaaaaccacaatccaacttaaggaataaacaagataaagaaagcaaatgaaaagataacaacaccaagaaat 6359952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 30814770 - 30814690
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 172  Q
    |||||||||||| ||||||||||||||||||| ||||||  |||||| |||||||||||||||||||| ||||||| |||||||    
T  30814770 tgttgtgaattc-ggactcaaatttcacaccagtacaaa--atatgatgtgtggagcaagtatcaatggcaaccaacaaccaaa 30814690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 22270310 - 22270241
Alignment:
Q  101 cggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 172  Q
    ||||||||||||||||| ||||||||| |||  || |||||||||||||||||||| ||||||| |||||||    
T  22270310 cggactcaaatttcacagcaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaacaaccaaa 22270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 22552448 - 22552485
Alignment:
Q  134 gaggtgtggagcaagtatcaatgacaaccaataaccaa 171  Q
    |||||||||||||||||||||||||||| |||||||||    
T  22552448 gaggtgtggagcaagtatcaatgacaactaataaccaa 22552485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 6430496 - 6430432
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatg 156  Q
    |||||||||||| |||||||||  ||||||||||||||| |||  || ||||||||||||||||||||    
T  6430496 tgttgtgaattc-ggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtatcaatg 6430432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 1360051 - 1360154
Alignment:
Q  181 aaccacaagcaataaaaacaatct-agatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaa 279  Q
    |||||||||||| || |||||| | |||| ||||||| ||||| ||||| | |||||| |||||||  ||| |||| | |||||||||||||||| || |    
T  1360051 aaccacaagcaacaacaacaattttagatctaatcta-aaaactaagtgtaaagcaaaaccacaatcgaacaaaagaagaaacaagataaagagaataga 1360149  T
Q  280 gaaaa 284  Q
    |||||    
T  1360150 gaaaa 1360154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 11384366 - 11384148
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaata--caaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 186  Q
    ||||||||| || ||||||||||||||||||||||  |||||||||||| |||||||| |||||||| |||||| |||||||||||||||| ||| ||||    
T  11384366 tgttgtgaactctggactcaaatttcacaccaatatacaaattatatgatgtgtggagtaagtatcattgacaagcaataaccaaatgtaaataa-ccac 11384268  T
Q  187 aagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 286  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |    
T  11384267 aagcaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtaaagaaaa-a 11384170  T
Q  287 ta-acaacaccaagaaatgttc 307  Q
    || |||||||||| ||||||||    
T  11384169 tagacaacaccaaaaaatgttc 11384148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 40329102 - 40328939
Alignment:
Q  142 gagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagcca 241  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||| ||||||| ||||||||||||| |||||||||||||| |||    
T  40329102 gagcaagtatcaatgacaaccaacaaccaaatgtaaataa-ccacaagcaataacaacagtctagatctaatctagaaaac-aagtgcatagcaaaacca 40329005  T
Q  242 caattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    ||||  ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||    
T  40329004 caatctaaccaaaggataaacaagaaaaggagagtagagaaaagataacaacaccaagaaatgttc 40328939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 180 - 307
Target Start/End: Complemental strand, 4283813 - 4283687
Alignment:
Q  180 aaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaa 279  Q
    |||||||||||||||| |||||| ||||  || |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4283813 aaaccacaagcaataacaacaatatagacctagtctataaa-ccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaa 4283715  T
Q  280 gaaaagataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||||||||    
T  4283714 gaaaagataacaacaccaagaaatgttc 4283687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 137 - 307
Target Start/End: Complemental strand, 18655734 - 18655563
Alignment:
Q  137 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaa 236  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||| || ||||  ||||||||||||||||||    
T  18655734 gtgtggagcaaatatcaatgacaaccaataaccaaatgtaaataaa-cacaagcaataacaacaatatagatctagtcta-taaaccaagtgcatagcaa 18655637  T
Q  237 agccacaattc-aaccaaaggataaacaagataa--agagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    | ||||||| | || ||| | |||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  18655636 aaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacaccaaaaaatgttc 18655563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 303
Target Start/End: Complemental strand, 3772521 - 3772359
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    |||||||| ||||||||| |||||||| |||||| | || ||| |||||||||| || |||||||||||| ||||||||||| | ||||||||||||||     
T  3772521 gtggagcaggtatcaatggcaaccaatcaccaaaagaaaataa-ccacaagcaacaacaacaatctagatttaatctagaaatc-aagtgcatagcaaaa 3772424  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaat 303  Q
    |||||||  |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  3772423 ccacaatctaaccaaagaataaacaagataaagagagtagagaaaagataacaccaccaagaaat 3772359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 42434779 - 42434996
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||  | |||||||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||| |||||||  |  || ||||||||    
T  42434779 tgttgtgaatttggaactcaaatttcacaccaatacaaactatatgatgtgaggagcaagtatcaatggcaaccaacaaccaaaaat--gttaaccacaa 42434876  T
Q  189 gcaataaaaacaatc--tagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaagaaaag 285  Q
    |||| || ||||||   ||||  || |||| ||   ||||||||||||||| ||||||| |||   ||||| ||||||||||||||| ||||||||||||    
T  42434877 gcaacaacaacaatagatagacctagtctataat--caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagaaagtaaagaaaag 42434974  T
Q  286 ataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||    
T  42434975 ataacaacaccaagaaatgttc 42434996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 40221992 - 40221917
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 298  Q
    ||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  40221992 caagtgcatagcaaaaccacaatccaaccaaagaatgaacaagataaagagagtaaagacaagataacaacaccaa 40221917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 2999723 - 2999806
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgtt 306  Q
    |||||||||||||||  ||||||  |||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  2999723 caagtgcatagcaaaatcacaatctaaccaaagaataaacaagataaagagagtagagaaaagatatcaacatcaagaaatgtt 2999806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 10930118 - 10930199
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagag-taaagaaaagataacaacaccaagaaat 303  Q
    ||||||||||||||| ||||||| |||| |||| ||||||||||||||| |||  |||||||||||||||||||||||||||    
T  10930118 caagtgcatagcaaaaccacaatccaacaaaagaataaacaagataaagggagcaaaagaaaagataacaacaccaagaaat 10930199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 306
Target Start/End: Complemental strand, 10240411 - 10240288
Alignment:
Q  183 ccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaaga 281  Q
    |||||| |||||| |||||||||||| ||||||||||| | || || | |||||| |||||||  |||||||  | ||||||||||||||||||| ||||    
T  10240411 ccacaaacaataacaacaatctagatctaatctagaaa-cgaaatgtaaagcaaaaccacaatcgaaccaaaaaaataaacaagataaagagagtgaaga 10240313  T
Q  282 aaagataacaacaccaagaaatgtt 306  Q
    ||||| ||||| |||||||||||||    
T  10240312 aaagagaacaaaaccaagaaatgtt 10240288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 4743023 - 4743069
Alignment:
Q  85 tttgtgttgtgaattccggactcaaatttcacaccaatacaaattata 132  Q
    |||||||||||||||| |||||||||| ||||||||||||||| ||||    
T  4743023 tttgtgttgtgaattc-ggactcaaatctcacaccaatacaaactata 4743069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 4283872 - 4283819
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtgga 143  Q
    |||||||||||| || ||||||||| ||||||||||||| ||||||| |||||||    
T  4283872 tgttgtgaattc-ggtctcaaattttacaccaatacaaactatatgatgtgtgga 4283819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 9633551 - 9633588
Alignment:
Q  240 cacaattcaaccaaaggataaacaagataaagagagta 277  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  9633551 cacaattgaaccaaagaataaacaagataaagagagta 9633588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 89 - 307
Target Start/End: Original strand, 17793 - 18008
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||| ||||||| |||||||||||||||||||||||||| |||  || ||||| |||||||||||||  |||||||||| ||||||||| ||| ||||||    
T  17793 tgttatgaattctggactcaaatttcacaccaatacaaactat--gatgtgtgtagcaagtatcaatagcaaccaataatcaaatgtaaataa-ccacaa 17889  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaagaaaagat 287  Q
    ||||||| |||||||||||| ||||||||||||| || ||||||||||| |||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  17890 gcaataacaacaatctagatctaatctagaaaacaaa-tgcatagcaaaaccacaatctaaccaaaggaataaacaagataaagagagtaaagaaaagat 17988  T
Q  288 aacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||    
T  17989 aacaacaccaagaaatgttc 18008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 90 - 307
Target Start/End: Complemental strand, 45727305 - 45727092
Alignment:
Q  90 gttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaag 189  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  45727305 gttgtgaattcag-actcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatggcaactaataaccaaatgtaaataaaccacaag 45727207  T
Q  190 caataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataa 289  Q
    ||| || || ||| ||||  || ||||  |||| |||||||||||||| ||||||| ||||||||| ||||  |||||||||||||||||||||||||||    
T  45727206 caacaacaataatatagacctagtcta-taaactaagtgcatagcaaaaccacaatccaaccaaagaataa--aagataaagagagtaaagaaaagataa 45727110  T
Q  290 caacaccaagaaatgttc 307  Q
    |||||| || ||||||||    
T  45727109 caacactaaaaaatgttc 45727092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 87 - 307
Target Start/End: Original strand, 35446675 - 35446889
Alignment:
Q  87 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 186  Q
    |||||||||||||| | |||||||||||||| ||||| ||| ||||||| |||||||||||||||||||  ||||||| |||||||     |||||||||    
T  35446675 tgtgttgtgaattctg-actcaaatttcacatcaatataaactatatgatgtgtggagcaagtatcaatcccaaccaacaaccaaa-----gtaaaccac 35446768  T
Q  187 aagcaataaaaacaatcta--gatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 284  Q
    |  ||| || |||||| ||  ||| || |||| ||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  35446769 actcaacaacaacaatatatagatctagtctataat--caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaagagagtaaagaaaa 35446866  T
Q  285 gataacaacaccaagaaatgttc 307  Q
    |||||||||||||||||||||||    
T  35446867 gataacaacaccaagaaatgttc 35446889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 143 - 303
Target Start/End: Original strand, 42287953 - 42288111
Alignment:
Q  143 agcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccac 242  Q
    ||||| |||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||| ||||    
T  42287953 agcaaatatcaatggcaaccaataaccaaatgtaaataa-ccacaagcaataacaacaatctagatctaatctagaaaac-aagtgcatagaaaaaccac 42288050  T
Q  243 aattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaat 303  Q
    ||| ||||||| | ||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  42288051 aatccaaccaaggaataaacaagttaaagagggtaaagaaaagataacagcaccaagaaat 42288111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 144 - 298
Target Start/End: Complemental strand, 17450898 - 17450749
Alignment:
Q  144 gcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccaca 243  Q
    ||||||||||||||||||| |||||||||||||| |    ||||||||| || ||||||||| |  ||||||||||| |||||||||||||||| |||||    
T  17450898 gcaagtatcaatgacaaccgataaccaaatgtaaat----cacaagcaacaacaacaatctaaacctaatctagaaa-ccaagtgcatagcaaaaccaca 17450804  T
Q  244 attcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 298  Q
    ||  |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17450803 atctaaccaaaggataaacaagataaagagagtacagaaaagataacaacaccaa 17450749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 88 - 303
Target Start/End: Original strand, 1631520 - 1631733
Alignment:
Q  88 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 187  Q
    ||||||||||| | ||| |||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||| ||| |||||||||    
T  1631520 gtgttgtgaatccgggattcaaatttcacatcaatacaaactatatgatgtgtggagtaagtatcaatgacaaccaacaaccaaatataaataaaccaca 1631619  T
Q  188 agcaataaaaaca--atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaag 285  Q
    |||||||| ||||  || ||||  || |||    || |||||| |||||||| ||||||| |||  || | ||||||||||||||||||| || ||||||    
T  1631620 agcaataacaacaatatatagacttagtct--gtaatcaagtgtatagcaaaaccacaatccaa--aaggaataaacaagataaagagagcaaggaaaag 1631715  T
Q  286 ataacaacaccaagaaat 303  Q
    |||||||||| |||||||    
T  1631716 ataacaacactaagaaat 1631733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 7451448 - 7451314
Alignment:
Q  139 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 238  Q
    ||||||||||| |||||||||||||||||||   ||| | | ||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||     
T  7451448 gtggagcaagtttcaatgacaaccaataacctcttgtcaat-aaccacaagcaataacaacaatctagatctaatctagaaaa-caagtgcataacaaaa 7451351  T
Q  239 ccacaattcaaccaaaggataaacaagataaagagag 275  Q
    |||||||  |||||||| |||||||||||||||||||    
T  7451350 ccacaatcgaaccaaagaataaacaagataaagagag 7451314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 33648421 - 33648337
Alignment:
Q  222 ccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgtt 306  Q
    ||||||||||||||||  ||||||| ||| |||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  33648421 ccaagtgcatagcaaaatcacaattaaactaaagaataaacaagataaagagagtagagaaaagacaacaacaccaataaatgtt 33648337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 30217923 - 30218026
Alignment:
Q  181 aaccacaagcaataaaaacaat-ctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaa 279  Q
    |||||||||||| |||| || | ||||||  |||||||||| ||||||| | | || | |||||||  |||||||| ||||||||||||||||||||| |    
T  30217923 aaccacaagcaacaaaatcatttctagatccaatctagaaa-ccaagtgtaaaacacaaccacaatcaaaccaaagaataaacaagataaagagagtaga 30218021  T
Q  280 gaaaa 284  Q
    |||||    
T  30218022 gaaaa 30218026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 42261384 - 42261464
Alignment:
Q  201 atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 284  Q
    |||||||| |||||||| || ||||||| |||||||| ||||||   |||||||  |||| |||||||||||||||||||||||    
T  42261384 atctagatctaatctagcaa-ccaagtgtatagcaaaaccacaaacaaaccaaa--ataatcaagataaagagagtaaagaaaa 42261464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 29868241 - 29868182
Alignment:
Q  85 tttgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaa 147  Q
    |||||||||||||||| |||||||||||||||| |||||||||   ||||| |||||||||||    
T  29868241 tttgtgttgtgaattc-ggactcaaatttcacagcaatacaaa--ctatgatgtgtggagcaa 29868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 7703 - 7490
Alignment:
Q  89 tgttgtgaattccgga-ctcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 187  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||  || |||||||||||||||||||| ||||||| |||||||     ||||||||||    
T  7703 tgttgtgaatttcggaactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaacaaccaaa-----gtaaaccaca 7611  T
Q  188 agcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaag 285  Q
    ||||| || || ||| || | |  || |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7610 agcaacaacaataatatatagacctagtctataaa-ccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaagaaaag 7512  T
Q  286 ataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||    
T  7511 ataacaacaccaagaaatgttc 7490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 252
Target Start/End: Complemental strand, 40751351 - 40751195
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||||||||| |||| ||||||||||||||| |||  ||  ||||||| ||||||||||||||||||||||||||||    |||||||||||    
T  40751351 tgttgtgaattccggacttaaatctcacaccaatacaaactat--gatttgtggagtaagtatcaatgacaaccaataaccaaat----gtaaaccacaa 40751258  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaacca 252  Q
    ||||||| |||||| ||||  |||||||  ||||||||||||||||||| |||||||| |||||    
T  40751257 gcaataacaacaatatagacctaatcta-taaaccaagtgcatagcaaaaccacaatttaacca 40751195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 5058423 - 5058208
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    ||||||||||| || |||||||||||||||||||| |||||||  || ||||||| |||||||||||| ||||||| |||||||  |  || ||||||||    
T  5058423 tgttgtgaatttcgaactcaaatttcacaccaatataaattat--gatgtgtggaacaagtatcaatggcaaccaacaaccaaaaat--gttaaccacaa 5058328  T
Q  189 gcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaagaaaag 285  Q
    |||| || |||||| || | |  || |||| ||   ||||||||||| ||| ||| ||| |||   ||||| ||||||||||||||||||||||||||||    
T  5058327 gcaacaacaacaatatatagacctagtctataat--caagtgcatagtaaaaccataatccaaagcaaggaataaacaagataaagagagtaaagaaaag 5058230  T
Q  286 ataacaacaccaagaaatgttc 307  Q
    ||||||||||||||||||||||    
T  5058229 ataacaacaccaagaaatgttc 5058208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 27637487 - 27637613
Alignment:
Q  176 aagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagag 275  Q
    ||||||| ||||||||| || |||||| ||||  || |||| ||| |||||||||||||||| ||||||| |||| || | |||||||||||||||||||    
T  27637487 aagtaaatcacaagcaacaacaacaatatagacctagtctataaa-ccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagagag 27637585  T
Q  276 taaagaaaagataacaacaccaagaaat 303  Q
    ||||||||||||||||||||||||||||    
T  27637586 taaagaaaagataacaacaccaagaaat 27637613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 252
Target Start/End: Complemental strand, 40763356 - 40763200
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||||||||| |||| ||||||||||| ||| |||  ||  |||||||||||||||||||||||||||||| |||||    |||||||| ||    
T  40763356 tgttgtgaattccggacttaaatctcacaccaatataaactat--gatctgtggagcaagtatcaatgacaaccaataatcaaat----gtaaaccataa 40763263  T
Q  189 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaacca 252  Q
    ||||||| |||||| ||||  |||||||  ||||||||||||||||||| ||| |||| |||||    
T  40763262 gcaataacaacaatatagacctaatcta-taaaccaagtgcatagcaaaaccataatttaacca 40763200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 40147508 - 40147424
Alignment:
Q  223 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||    
T  40147508 caagtgcataacaaaaccacaattcaaccaaaggataaacaagataaatagagtaaagaaaagataaaaacacaaaaaaatgttc 40147424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 307
Target Start/End: Complemental strand, 27015896 - 27015686
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 188  Q
    |||||||||||  |||| ||||||||||| ||| ||||| |||  || | ||||||||||||| |||| ||| ||| |||||||     ||||| |||||    
T  27015896 tgttgtgaatttgggacccaaatttcacagcaaaacaaactat--gatgggtggagcaagtattaatggcaatcaacaaccaaa-----gtaaatcacaa 27015804  T
Q  189 gcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 286  Q
    |||| || |||||| || |||  || |||| ||   |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |    
T  27015803 gcaacaacaacaatatatatacctagtctataat--caagtgcatatcaaaaccacaattcaaccaaagcataaacaagataaagagagtaaagaaaaaa 27015706  T
Q  287 taacaacaccaagaaatgttc 307  Q
    |||| ||||||| ||||||||    
T  27015705 taac-acaccaaaaaatgttc 27015686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 307
Target Start/End: Complemental strand, 213800 - 213629
Alignment:
Q  137 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaa 236  Q
    |||| ||||||||||||||  ||| ||||||||||||||||  |||||||||||||||| |||||| ||||  || ||||  || | |||||||||||||    
T  213800 gtgtagagcaagtatcaatagcaatcaataaccaaatgtaaa-aaaccacaagcaataacaacaatatagacctagtctattaa-ctaagtgcatagcaa 213703  T
Q  237 agccacaat-tcaaccaaaggataaacaagataa--agagagtaaagaaaagataacaacaccaagaaatgttc 307  Q
    | |||||||   || ||| | |||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  213702 aaccacaatcaaaagcaaggaataaacaagataaagagagagtaaaggaaagataacaacaccaagaaatgttc 213629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 181 - 306
Target Start/End: Original strand, 16640818 - 16640944
Alignment:
Q  181 aaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaa--gagagtaa 278  Q
    |||||||||||| || || ||||||||| ||||||||||| | || |||||| |||| |||||||| ||| |||| |||| |||||||||  ||||| ||    
T  16640818 aaccacaagcaacaacaaaaatctagatttaatctagaaatcaaa-tgcataacaaaaccacaatttaactaaagaataagcaagataaatagagagcaa 16640916  T
Q  279 agaaaagataacaacaccaagaaatgtt 306  Q
    ||||||||||||||||||||||||||||    
T  16640917 agaaaagataacaacaccaagaaatgtt 16640944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 28278652 - 28278592
Alignment:
Q  102 ggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaa 164  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||||||||| |||||||    
T  28278652 ggactcaaatttcacaccaatacaaa--atatgatgtgtggagcaagtatcaatggcaaccaa 28278592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 317014 - 316928
Alignment:
Q  220 aaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgtt 306  Q
    ||||||||| | |||||| |||||||| |||||||| |||||||| ||||||||||||  ||||||| |||||||| ||||| ||||    
T  317014 aaccaagtgtaaagcaaaaccacaattgaaccaaagaataaacaaaataaagagagtagggaaaagagaacaacacaaagaattgtt 316928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 38747353 - 38747281
Alignment:
Q  89 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaa 164  Q
    |||||||||||  |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||    
T  38747353 tgttgtgaattt-ggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaa 38747281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 40147613 - 40147531
Alignment:
Q  86 ttgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaa 171  Q
    ||||||||||||||| |||||||||  ||||||||||||||| |||  || ||||||||||||||| ||||  |||||| ||||||    
T  40147613 ttgtgttgtgaattc-ggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtattaatggaaaccaacaaccaa 40147531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 4160850 - 4160775
Alignment:
Q  220 aaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacac 295  Q
    ||||||||| | |||||| ||| |||  |||||||| ||||||||||||| ||||  | |||||||||||||||||    
T  4160850 aaccaagtgtaaagcaaaaccataatcgaaccaaagaataaacaagataatgagaacatagaaaagataacaacac 4160775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 13488571 - 13488517
Alignment:
Q  87 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggag 144  Q
    |||||||||||||| |||||||||| |||||||||||||||  |||||| ||||||||    
T  13488571 tgtgttgtgaattc-ggactcaaatctcacaccaatacaaa--atatgatgtgtggag 13488517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 30793362 - 30793320
Alignment:
Q  241 acaattcaaccaaaggataaacaagataaagagagtaaagaaa 283  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  30793362 acaattaaaccaaagaataaacaagataaagagagtagagaaa 30793320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 306
Target Start/End: Complemental strand, 10820 - 10653
Alignment:
Q  138 tgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaa 237  Q
    ||||||| ||||||||||||||||| ||||||||| | || ||| |||||||||| || |||||||||||| ||||||||||| | ||||| |||| |||    
T  10820 tgtggagaaagtatcaatgacaaccgataaccaaaagaaaataa-ccacaagcaacaacaacaatctagatttaatctagaaatc-aagtgtatagtaaa 10723  T
Q  238 gccacaattcaaccaaaggataaacaagataaa-gagagtaaagaaaagataacaacaccaagaaatgtt 306  Q
     | |||||  || ||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||    
T  10722 actacaatctaatcaaagaataaacaagataaaagagagtagaggaaagataacaacaccaagaaatgtt 10653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 1291 - 1379
Alignment:
Q  197 aacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 286  Q
    |||||||||||| ||||||||||| ||||||| | || ||| |||||||  |||||||  ||||| ||||||||||||||||||| ||||    
T  1291 aacaatctagatctaatctagaaa-ccaagtgtaaagtaaaaccacaatcaaaccaaaaaataaataagataaagagagtaaagagaaga 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 3431 - 3482
Alignment:
Q  140 tggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaa 192  Q
    ||||||||||||||||| ||||||||||| |||||||| | ||||||||||||    
T  3431 tggagcaagtatcaatggcaaccaataactaaatgtaaat-aaccacaagcaa 3482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 490219 - 490299
Alignment:
Q  201 atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 284  Q
    |||||||| |||||||| || ||||||| |||||||| ||||||   |||||||  |||| |||||||||||||||||||||||    
T  490219 atctagatctaatctagcaa-ccaagtgtatagcaaaaccacaaacaaaccaaa--ataatcaagataaagagagtaaagaaaa 490299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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