View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_34 (Length: 306)
Name: NF1516_low_34
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 290
Target Start/End: Complemental strand, 35948133 - 35947858
Alignment:
| Q |
15 |
cacagagaactttgagcttgttggtattttgtttccttgtgggaatgatgttagtgagtggtcagagtgcaaaaggtgtaaggtcaacgtaccaccttta |
114 |
Q |
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| T |
35948133 |
cacagagaaagttgagcttgttggtattttgtttccttgtgggaatgatgttagtgagtggtcagagtgcaaacggtgtaaggtcaacgtaccaccttta |
35948034 |
T |
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| Q |
115 |
caaccctcagaatattaattgggattacaacagagccagtgtatactgtgctacctgggatgcaaaccagcccttggaatggcgtaaaaagtatggttgg |
214 |
Q |
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| T |
35948033 |
caaccctcagaatattaattgggattacaacagagccagtgtatactgtgctacctgggatgcaaaccagcccttggaatggcgtaaaaagtatggttgg |
35947934 |
T |
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| Q |
215 |
actgccttttgtggaccccagggccctcatggtagagactcttgcggcaagtgtttgagggtatgtgtcgtactta |
290 |
Q |
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| T |
35947933 |
actgccttttgtggaccccagggccctcgtggtagagactcttgcggcaagtgtttgagggtatgtgtcgtactta |
35947858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 35953671 - 35953407
Alignment:
| Q |
15 |
cacagagaactttgagcttgttggtattttgtttccttgtgggaatgatgttagtgagtggtcagagtgcaaaaggtgtaaggtcaacgtaccaccttta |
114 |
Q |
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| T |
35953671 |
cacagagaactttgagcttgttggttttgtgtttccttgtgggaacgatgttagtgaatggtcagagtgcaaacaacgttagggcaacataccaccttta |
35953572 |
T |
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| Q |
115 |
caaccctcagaatattaattgggattacaacagagccagtgtatactgtgctacctgggatgcaaaccagcccttggaatggcgtaaaaagtatggttgg |
214 |
Q |
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| T |
35953571 |
caaccctcagaatattaactggaactacaacactgccagtgtttactgtgctacatgggatgccaaccagcccttgtcatggcgtcaaaagtatggctgg |
35953472 |
T |
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| Q |
215 |
actgccttttgtggaccccagggccctcatggtagagactcttgcggcaagtgtttgagggtatg |
279 |
Q |
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| T |
35953471 |
actgccttttgtggaccccagggccctcatggcagagactcttgcggcaagtgcttgagggtatg |
35953407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 35940061 - 35939845
Alignment:
| Q |
15 |
cacagagaactttgagcttgttggtattttgtttccttgtgggaatgatgttagtgagtggtcagagtgcaaaaggtgtaaggtcaacgtaccaccttta |
114 |
Q |
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| T |
35940061 |
cacagagaaagttaagcttgttggtattgtgtttccttgtgggaacgatgttagtgagtggtcagagtgcaaacaacgtaagggcaacatacaataatta |
35939962 |
T |
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| Q |
115 |
caaccctcagaatattaattgggattacaacagagccagtgtatactgtgctacctgggatgcaaaccagcccttggaatggcgtaaaaagtatggttgg |
214 |
Q |
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| T |
35939961 |
caaccctcagaatattaactgggactacaacactgccagtgtatactgtgctacctgggatgccaaccagcccttgtcatggcgtagcaaatatggttgg |
35939862 |
T |
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| Q |
215 |
actgccttttgtggacc |
231 |
Q |
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| T |
35939861 |
actgccttttgtggacc |
35939845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 35929180 - 35929119
Alignment:
| Q |
170 |
tgggatgcaaaccagcccttggaatggcgtaaaaagtatggttggactgccttttgtggacc |
231 |
Q |
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| T |
35929180 |
tgggatgcagaccagcccttgtcatggcgtagcaaatatggttggactgccttctgtggacc |
35929119 |
T |
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