View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_35 (Length: 281)
Name: NF1516_low_35
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_35 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 28148922 - 28148656
Alignment:
| Q |
1 |
aagttcattctccgtctgtggtgtttctttcatttttatctgcacaatagaatagcatccttgattcaaatatattgtcatggtgattggattcagaagt |
100 |
Q |
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| T |
28148922 |
aagttcattctccgtctgtggtgtttctttcatttttatctgcacaaaagaatagcatccttgattcaaatatattgtcatggtgattggattcagaagt |
28148823 |
T |
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| Q |
101 |
ggtaagcacaggatttctggacttcaatcctaacctcaaaatatttattagtatttatttacctgtggagaagtcaacttgtgttccaatgctgtttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28148822 |
ggtaagcacaggatttctggacttcaatcctaacctcaaactatttattagta----tttacctgtggagaagtcaacttgtgttccgatgctgtttgaa |
28148727 |
T |
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| Q |
201 |
cttcaatcccaaccacaacatctttcgtggtttgtggactaggattttcattaccactatcgtggcctttg |
271 |
Q |
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| T |
28148726 |
cttcaatcccaaccacaaaatctttcgtggtttgtggactaggattttcattaccactatcgtggcctttg |
28148656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 28054366 - 28054297
Alignment:
| Q |
78 |
tcatggtgattggattcagaagtggtaagcacaggatttctggacttcaatcctaacctcaaaatattta |
147 |
Q |
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| T |
28054366 |
tcatggtggttggattgatatgtggtaagcacaggatttctggacttcaatcgcaatctcaaaatattta |
28054297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 28064791 - 28064722
Alignment:
| Q |
78 |
tcatggtgattggattcagaagtggtaagcacaggatttctggacttcaatcctaacctcaaaatattta |
147 |
Q |
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| T |
28064791 |
tcatggtggttggattgatatgtggtaagcacaggatttctggacttcaatcgcaatctcaaaatattta |
28064722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 26234158 - 26234213
Alignment:
| Q |
156 |
tatttacctgtggagaagtcaacttgtgttccaatgctgtttgaacttcaatccca |
211 |
Q |
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| T |
26234158 |
tattgacctgtggagaagtcaactggtgttctaatgctttttgaacttcactccca |
26234213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 271
Target Start/End: Original strand, 26114287 - 26114397
Alignment:
| Q |
161 |
acctgtggagaagtcaacttgtgttccaatgctgtttgaacttcaatcccaaccacaacatctttcgtggtttgtggactaggattttcattaccactat |
260 |
Q |
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| T |
26114287 |
acctgtggagaagtcaactggtgttccgatgcttcttgaatttcactcccagcagcaaaatctttagttgtttctgcacttggattttcatcaccaccat |
26114386 |
T |
|
| Q |
261 |
cgtggcctttg |
271 |
Q |
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|| ||||||| |
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| T |
26114387 |
tgttgcctttg |
26114397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 26111865 - 26111965
Alignment:
| Q |
156 |
tatttacctgtggagaagtcaacttgtgttccaatgctgtttgaacttcaatcccaaccacaacatctttcgtggtttgtggactaggattttcattacc |
255 |
Q |
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|||| ||||||||| |||| ||||||||||| ||||| |||| ||||| ||||| | ||| |||||| ||||||| || ||| |||||||||| ||| |
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| T |
26111865 |
tattcacctgtggacaagttaacttgtgttctgatgcttcttgatcttcactcccagcagcaaaatcttttgtggtttctgcacttggattttcatcacc |
26111964 |
T |
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| Q |
256 |
a |
256 |
Q |
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| T |
26111965 |
a |
26111965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 18307 - 18204
Alignment:
| Q |
166 |
tggagaagtcaacttgtgttccaatgctgtttgaacttcaatcccaaccacaacatctttcgtggtttgtggactaggattttcattaccactatcgtgg |
265 |
Q |
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|||||||||||||| |||||| ||| || || |||||||| |||| | ||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18307 |
tggagaagtcaactcgtgttctgatgatgctttaacttcaaccccagcttcaaaatcttttgtggtttgtggactaggattttcattaccactatcgtgg |
18208 |
T |
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| Q |
266 |
cctt |
269 |
Q |
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|||| |
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| T |
18207 |
cctt |
18204 |
T |
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