View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_36 (Length: 280)
Name: NF1516_low_36
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 50101379 - 50101113
Alignment:
| Q |
1 |
tcgaaatgtgaaggagaatcctgaacatcgcttccaacagcttcttcttcttcaatggtttgcattgttatcgttcctctttcgcaaccgtaactgaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101379 |
tcgaaatgtgaaggagaatcctgaacatcgcttccaacagcttcttcttcttcaatggtttgcattgttatcgttcctctttcgcaaccgtaactgaata |
50101280 |
T |
|
| Q |
101 |
gtttcacggtgaacgaaggaacgaacgagtnnnnnnnnnnnnnnnnnggattgataagaagcgctttcccgcgcaacaagtgattattattactttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101279 |
gtttcacggtgaacgaaggaacgaacgagtgagagagagagaga----gattgataagaagcgctttcccgcgcaacaagtgattattattactttgaaa |
50101184 |
T |
|
| Q |
201 |
aagttgttgagagaaaaagaaagagttttgagaattgttttgcactgatatgttgttgtgttctgttctgt |
271 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101183 |
aagttgttgagagaaaaagagagagttttgagaattgttttgcactgatatgttgttgtgttctgttctgt |
50101113 |
T |
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