View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_44 (Length: 248)
Name: NF1516_low_44
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42551411 - 42551179
Alignment:
| Q |
1 |
gttgcttatatctaaacttctgcaccatacaa-cttttctccatagttcatcaattttcttatgagtgtattctcttgaaatattcatatagcaaagcta |
99 |
Q |
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| T |
42551411 |
gttgcttatatctaaacttctgcaccatacactcttttctccatagttcatcaattttcttatgagtgtattctcttgaaatattcatatagcaaatcta |
42551312 |
T |
|
| Q |
100 |
cttt----gttctatacatggcttcaaatatttgcaaaccttcacgtcgtgataattctctaataataaaaccaaccaaatatacctcaaagcctaccct |
195 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551311 |
ctttaattgttctatacatggcttcaaatatttgcaaaccttcacgtcgtgataattctctaataataaaaccaaccaaatatacctcaaagcctaccct |
42551212 |
T |
|
| Q |
196 |
tttgctcaaagactacctccgagatgacctaag |
228 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42551211 |
tttgctcaaagactacctccgagatgacctaag |
42551179 |
T |
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