View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_50 (Length: 244)
Name: NF1516_low_50
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3745535 - 3745305
Alignment:
| Q |
1 |
tccatgattatgatgattttttctatctaaaataaataaa-tacatgtgggagtgcgagagagccagagaggattgaccaaaagtcaaacgactctagaa |
99 |
Q |
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| T |
3745535 |
tccatgattatgatgattttttctatctaaaaaaaaaaaaatacatgtgggagtgcgagagagccagagaggattgaccaaaagtcaaacgactctagaa |
3745436 |
T |
|
| Q |
100 |
ggtacaagaaagaaatagaaagaactctaaataaggaatgttaagagaaccacgtgttcttctaaactcgaaactactagaactttcaaatgtccctact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745435 |
ggtacaagaaagaaatagaaagaactctaaataaggaatgttaagagaaccacgtgttcttctaaactcgaaactactagaactttcaaatgtccctact |
3745336 |
T |
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| Q |
200 |
gtgtttccgttccatttctcctgaaccttct |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3745335 |
gtgtttccgttccatttctcctgaaccttct |
3745305 |
T |
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