View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_51 (Length: 242)
Name: NF1516_low_51
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_51 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 50101706 - 50101482
Alignment:
| Q |
18 |
aaacaatcaatagcttaaacgaaacaaaacacaagtattgaaaacaagagcgaaaaagataccttcaaaagttgaatgtgaaggttagcaagagaagcat |
117 |
Q |
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| T |
50101706 |
aaacaatcaatagcttaaacgaaacaaaacacaagtattgaaaacaagagcgaaaaagataccttcaaaagttgaatgtgaaggttagtaagaaaagcat |
50101607 |
T |
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| Q |
118 |
taggtttaacaagtccgatctcaatttcttcggctgtaaccttcagatcattaccaagtaatggactaaacacctgaatcacacgaaccacaaaaaatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101606 |
taggtttaacaagtccgatctcaatttcttcggctgtaaccttcagatcattaccaagtaatggactaaacacctgaatcacacgaaccacaaaaaatgt |
50101507 |
T |
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| Q |
218 |
tactgagatgattacgaatcgtaac |
242 |
Q |
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|||| |||||||||||||||||||| |
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| T |
50101506 |
tactaagatgattacgaatcgtaac |
50101482 |
T |
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