View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_55 (Length: 238)
Name: NF1516_low_55
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_55 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 43616279 - 43616053
Alignment:
| Q |
18 |
tatttgttcataaattgagtcattcatattagagaagat------tcttgacctatatcaaacttctagcttatagcaaatatatttgcatctatcattt |
111 |
Q |
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| T |
43616279 |
tatttgttcataaattgagtcattcatattagagaggatgttgattcttgacctatatcaaacttctagcttatagcaaatatatttgcatctatcattt |
43616180 |
T |
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| Q |
112 |
ttctaacaatacttgaaatagtatttgagtttatggtttataacgtactgtttttctcaattttgtctttattgattaaattgaagaaaactatatagac |
211 |
Q |
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| T |
43616179 |
ttctaacaatacttgaaatagtatttgagtttatggtttataacgtactgtttttctcaattttgtctttattgattaaattgaagaaaactatatagac |
43616080 |
T |
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| Q |
212 |
acatttaaaaattgtatatgtctattt |
238 |
Q |
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| T |
43616079 |
acatttaaaaattgtatatgtctattt |
43616053 |
T |
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