View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1516_low_56 (Length: 236)
Name: NF1516_low_56
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1504994 - 1505212
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1504994 |
tacctagactaggaaaggaggctgccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaattgtttgcaccacaagtggtgt |
1505093 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1505094 |
agacatgcctggagctgattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
1505193 |
T |
|
| Q |
201 |
acggtgcttggtttggcca |
219 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
1505194 |
acggtgcttcgtttggcca |
1505212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1478016 - 1478234
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||||||| || ||||| ||||||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
1478016 |
tacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggccaaccaaaatcaaagattacacacttgatcttttgcaccacaagtggtgt |
1478115 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
1478116 |
agacatgcctggcgctgattaccaactcaccaaactcttaggtcttcgtccatatgtgaagaggtatatgatgtaccaacaaggatgttttgcaggtggg |
1478215 |
T |
|
| Q |
201 |
acggtgcttggtttggcca |
219 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
1478216 |
acggtgcttcgtttggcca |
1478234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 1482212 - 1482428
Alignment:
| Q |
3 |
cctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtag |
102 |
Q |
| |
|
|||||||||||||||||||| || || || ||||||||||||||||| || ||||| ||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
1482212 |
cctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaaatcaaagattacacacttaatattttgtaccacaagtggtgtag |
1482311 |
T |
|
| Q |
103 |
acatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggac |
202 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
1482312 |
acatgcctggtgccgattaccaactcacaaaactcttaggtcttcgtccatatgtgaagagatacatgatgtaccaacaaggatgctttgcaggtgggac |
1482411 |
T |
|
| Q |
203 |
ggtgcttggtttggcca |
219 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
1482412 |
ggtgcttcgtttggcca |
1482428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1492185 - 1492401
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| || || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1492185 |
tacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagcggtgt |
1492284 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
|||||||||||| || ||||| |||||||| ||||||||||||||||| |||||||| || || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1492285 |
agacatgcctggggccgattatcaactcactaaactcttaggtcttcgtccatatgtaaaaagatacatgatgtaccagcaaggttgttttgcaggtggc |
1492384 |
T |
|
| Q |
201 |
acggtgcttggtttggc |
217 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
1492385 |
acggtacttcgtttggc |
1492401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1509141 - 1509349
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
||||||| |||||||| |||| || || || ||||||||||||||||| |||||||| ||||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
1509141 |
tacctaggctaggaaaagaggttgcagtgaaggctataaaagaatggggccagccaaaatcaaagattacacatttaatcttttgcaccacaagtggtgt |
1509240 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
|| ||| ||||||| |||| ||||| |||||||| |||||||||| ||||||||| || ||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
1509241 |
tgatatgtctggagctcattatcaacttaccaaacttttaggtcttcacccatatgtaaaaaggtacatgatgtaccaacaaaggtgttttgcaggtggc |
1509340 |
T |
|
| Q |
201 |
acggtgctt |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
1509341 |
actgtgctt |
1509349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1499257 - 1499473
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| || || || ||||| ||||||||||||| || |||||||| ||||| || ||||| |||||||| |||||||| |
|
|
| T |
1499257 |
tacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatattacacatttaattttttgcacctatagtggtgt |
1499356 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||| | ||| |||| ||||||||| |
|
|
| T |
1499357 |
agacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacatgatgtaccaactagggtgttatgcaggtgga |
1499456 |
T |
|
| Q |
201 |
acggtgcttggtttggc |
217 |
Q |
| |
|
|| || ||| ||||||| |
|
|
| T |
1499457 |
acagtacttcgtttggc |
1499473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 1486689 - 1486882
Alignment:
| Q |
3 |
cctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtag |
102 |
Q |
| |
|
||||| |||||||| ||||| || || |||||||||||||||| ||| || ||||||||||||||||| |||||||| ||||||||| |||||| ||| |
|
|
| T |
1486689 |
cctaggctaggaaatgaggctgcagtgaaagctataaaagaatagggccaaccaaagtcaaagattacacacttaatattttgcaccatgagtggtatag |
1486788 |
T |
|
| Q |
103 |
acatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcagg |
196 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||||| |||| ||||||| |||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
1486789 |
gcatgcctggtgccgattaccaactcacaaaactcttaggtctttgcccggatgtgaaacggtatatgatataccaacaaggatgctttgcagg |
1486882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 5284325 - 5284543
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||| || || || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284325 |
tacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
5284424 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5284425 |
agacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggt |
5284524 |
T |
|
| Q |
201 |
acggtgcttggtttggcca |
219 |
Q |
| |
|
||||| ||| ||||||||| |
|
|
| T |
5284525 |
acggtacttcgtttggcca |
5284543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 5302513 - 5302731
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||| || || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302513 |
tacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
5302612 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||| | ||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5302613 |
agacatgcccgaagctgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggc |
5302712 |
T |
|
| Q |
201 |
acggtgcttggtttggcca |
219 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
5302713 |
acggtgcttcgtttggcca |
5302731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 5289802 - 5289584
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||| || || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289802 |
tacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
5289703 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
5289702 |
agacatgcctggagccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggc |
5289603 |
T |
|
| Q |
201 |
acggtgcttggtttggcca |
219 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
5289602 |
acggtgcttcgtttggcca |
5289584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 5310414 - 5310632
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||| || || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310414 |
tacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
5310513 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
5310514 |
agacatgcctggagctgattatcaactcacaaaactcttgggccttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggc |
5310613 |
T |
|
| Q |
201 |
acggtgcttggtttggcca |
219 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
5310614 |
acggtgcttcgtttggcca |
5310632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5315128 - 5315344
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| || || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315128 |
tacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
5315227 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
5315228 |
tgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttgcaggtggc |
5315327 |
T |
|
| Q |
201 |
acggtgcttggtttggc |
217 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
5315328 |
acggtgctccgtttggc |
5315344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 46707093 - 46706877
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| || || || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
46707093 |
tacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattacccacttaatcgtttgcactactagtggtgt |
46706994 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| || |
|
|
| T |
46706993 |
agacatgcctggagctgattaccaactcacaaaactcttcggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggc |
46706894 |
T |
|
| Q |
201 |
acggtgcttggtttggc |
217 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
46706893 |
acggggcttcgtttggc |
46706877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 32531019 - 32530972
Alignment:
| Q |
95 |
tggtgtagacatgcctggagcggattaccaactcaccaaactcttagg |
142 |
Q |
| |
|
||||||||||||||| || || |||||||||||||| ||||||||||| |
|
|
| T |
32531019 |
tggtgtagacatgccgggtgccgattaccaactcactaaactcttagg |
32530972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 44128591 - 44128807
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| || || || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44128591 |
tacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgt |
44128690 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| || |
|
|
| T |
44128691 |
agacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggc |
44128790 |
T |
|
| Q |
201 |
acggtgcttggtttggc |
217 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
44128791 |
acggtccttcgtttggc |
44128807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 44132796 - 44133012
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| || || || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44132796 |
tacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgt |
44132895 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| || |
|
|
| T |
44132896 |
agacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggc |
44132995 |
T |
|
| Q |
201 |
acggtgcttggtttggc |
217 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
44132996 |
acggtccttcgtttggc |
44133012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 44141218 - 44141434
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
||||||||||||| |||||||| || || || || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44141218 |
tacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgt |
44141317 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| || |
|
|
| T |
44141318 |
agacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggc |
44141417 |
T |
|
| Q |
201 |
acggtgcttggtttggc |
217 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
44141418 |
acggtccttcgtttggc |
44141434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 24163890 - 24163677
Alignment:
| Q |
6 |
agactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagaca |
105 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||| || |||||||| ||||||| | |||||||||||| | |
|
|
| T |
24163890 |
agactaggaaaggaggcagccgtgaaggctataaaagaatggggccaaccaaagtcaaagatcacacacttaatattttgcactataagtggtgtagata |
24163791 |
T |
|
| Q |
106 |
tgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggt |
205 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||||||||||| ||| || ||||| ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
24163790 |
tgcctggtgccgattaccaactcacaaaactcttaggtcttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggt |
24163691 |
T |
|
| Q |
206 |
gcttggtttggcca |
219 |
Q |
| |
|
||| | ||||||| |
|
|
| T |
24163690 |
acttcgcttggcca |
24163677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 217
Target Start/End: Complemental strand, 37863463 - 37863279
Alignment:
| Q |
33 |
gctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggagcggattaccaactcacca |
132 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||| || |||||||| || || || || ||||| | |
|
|
| T |
37863463 |
gctatcaaggaatggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgcctggtgctgactatcagctcacaa |
37863364 |
T |
|
| Q |
133 |
aactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggc |
217 |
Q |
| |
|
| ||||| ||||||||||| ||||||||| | || |||||||| || ||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
37863363 |
agctcttgggtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgcttcgtttggc |
37863279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37859469 - 37859253
Alignment:
| Q |
1 |
tacctagactaggaaaggaggcagccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgt |
100 |
Q |
| |
|
|||| ||||||||||| |||||||| ||| || || || ||||||||||| || ||||| |||||||| ||| | ||| |||||||||| ||||| || |
|
|
| T |
37859469 |
taccaagactaggaaaagaggcagcaacaaaggccatcaaggaatggggtcaacctaagtccaagattacccacctcatcttttgcaccaccagtggcgt |
37859370 |
T |
|
| Q |
101 |
agacatgcctggagcggattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtggg |
200 |
Q |
| |
|
|||||||| || || || || || || || || ||||| || ||||| |||||||||||| | |||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
37859369 |
ggacatgcccggtgccgactatcagctgacaaagctcttgggccttcgtccatatgtgaagcgttacatgatgtaccaacaaggttgttttgctggtggc |
37859270 |
T |
|
| Q |
201 |
acggtgcttggtttggc |
217 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
37859269 |
acggtgcttcgtttggc |
37859253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 39030115 - 39030285
Alignment:
| Q |
28 |
taaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggagcggattaccaact |
127 |
Q |
| |
|
|||| ||||| || ||||||||||| || ||||||| | ||||||| | || ||||||| |||||||||| || ||||||||||| || || || || |
|
|
| T |
39030115 |
taaaggctatcaatgaatggggtcaacctaagtcaatggttactcatctcatattttgcacttcaagtggtgtcgatatgcctggagctgactatcagct |
39030214 |
T |
|
| Q |
128 |
caccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtg |
198 |
Q |
| |
|
||| || |||||||| ||| | |||||||| ||| | || ||||||||||| ||||| |||||||| |||| |
|
|
| T |
39030215 |
cacaaagctcttaggcctttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgctggtg |
39030285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 35250856 - 35251044
Alignment:
| Q |
29 |
aaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggagcggattaccaactc |
128 |
Q |
| |
|
|||||| || || ||||||||||| |||||||| ||||| |||||| | || |||||| || |||||||| || |||||||| || ||||| || ||| |
|
|
| T |
35250856 |
aaaagcgatcaaggaatggggtcaaccaaagtccaagatcactcacctcatattttgcattactagtggtgtggatatgcctggtgctgattatcagctc |
35250955 |
T |
|
| Q |
129 |
accaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttggtttggc |
217 |
Q |
| |
|
|| ||| | |||| ||||| || | ||||| | || ||||||||||| ||||| ||||| || ||||| | ||| ||| ||||||| |
|
|
| T |
35250956 |
acaaaattgctaggacttcgtccgtcggtgaaacgttatatgatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggc |
35251044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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