View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_57 (Length: 236)
Name: NF1516_low_57
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 48051866 - 48051985
Alignment:
| Q |
1 |
cgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcacatagagggagatagatcatgctaatttacgtaga |
100 |
Q |
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| T |
48051866 |
cgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcatatagagggagatagatcatgctaatttacgt--a |
48051963 |
T |
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| Q |
101 |
tatgtggttaacctcgttaatg |
122 |
Q |
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| T |
48051964 |
catgtggttaacctcgttaatg |
48051985 |
T |
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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 48044171 - 48044263
Alignment:
| Q |
1 |
cgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcacatagagggagatagatcatgctaattt |
93 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| || | |||||||||||| ||| ||| |||| |
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| T |
48044171 |
cgtgccatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagataggtcacgcttattt |
48044263 |
T |
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