View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_59 (Length: 229)
Name: NF1516_low_59
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 52 - 199
Target Start/End: Complemental strand, 28149050 - 28148903
Alignment:
| Q |
52 |
aacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagtttgttg |
151 |
Q |
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| T |
28149050 |
aacaagaacataggcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggactagaaatcacttttaagtttgttg |
28148951 |
T |
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| Q |
152 |
gtaattctaaatcaggaacattttcaataagttcattctccgtctgtg |
199 |
Q |
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| T |
28148950 |
gtatttctaaatcaggagcattttcaataagttcattctccgtctgtg |
28148903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 28184917 - 28184774
Alignment:
| Q |
52 |
aacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagtttgttg |
151 |
Q |
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| T |
28184917 |
aacaagaacagaagcaataatgatcttcagctattaattacatccattaaaattctaacgcagtttga-catggcctggaaatcacttttgaatttgttg |
28184819 |
T |
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| Q |
152 |
gtaattctaaatcaggaacattttcaataagttcattctccgtct |
196 |
Q |
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| T |
28184818 |
gtatttctaaatcaggaacattttccacaagttcatgctctgtct |
28184774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 28509890 - 28510033
Alignment:
| Q |
52 |
aacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagtttgttg |
151 |
Q |
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| T |
28509890 |
aacaagcacataagcattaattatcttcagctattaattacatccattcaaattctaacacaatttga-catggcctggaaatcacttttgaatttgttg |
28509988 |
T |
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| Q |
152 |
gtaattctaaatcaggaacattttcaataagttcattctccgtct |
196 |
Q |
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| T |
28509989 |
gtatttctaaatcaggaacattttccacaagttcatgctctgtct |
28510033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 28160365 - 28160222
Alignment:
| Q |
52 |
aacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagtttgttg |
151 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||| |||| |||||| |||||| || || | |||||| | |||||||||||| | ||||||| |
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| T |
28160365 |
aacaagaacagaagcaataatgatcttcagctattaattacatccattaaaattctaacgcagtttga-catggcctggaaatcacttttgaatttgttg |
28160267 |
T |
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| Q |
152 |
gtaattctaaatcaggaacattttcaataagttcattctccgtct |
196 |
Q |
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| T |
28160266 |
gtatttctaaatcgggaacattttccacaagttcatgctctgtct |
28160222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 28480707 - 28480841
Alignment:
| Q |
52 |
aacaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagtttgttg |
151 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| |||| ||| || |||||| ||||| | |||||| | |||||||||||| | ||||||| |
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| T |
28480707 |
aacaagcacataagcattaattatcttcagctattaattacatccattcaaattctaacacaatttga-catggcctggaaatcacttttgaatttgttg |
28480805 |
T |
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| Q |
152 |
gtaattctaaatcaggaacattttcaataagttcat |
187 |
Q |
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| T |
28480806 |
gtatttctaaatcagtaacattttccacaagttcat |
28480841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 28082854 - 28082712
Alignment:
| Q |
53 |
acaagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagtttgttgg |
152 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||| || |||| |||||| ||||| |||||| | |||||| | |||||||||||| | |||||||| |
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| T |
28082854 |
acaagaacagaagcattaacgatcttcagcgattcataacatccattaaaattctaaggcaattcga-catggcctggaaatcacttttgaatttgttgg |
28082756 |
T |
|
| Q |
153 |
taattctaaatcaggaacattttcaataagttcattctccgtct |
196 |
Q |
| |
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|| ||||||||||||||||||||| | |||||||| ||| |||| |
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| T |
28082755 |
tatttctaaatcaggaacattttccacaagttcatgctctgtct |
28082712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 28054529 - 28054394
Alignment:
| Q |
55 |
aagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagtttgttggta |
154 |
Q |
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||||||| |||| |||| ||||||| |||||||||| |||| |||||||| |||| |||| |||||| | |||| |||| | |||||||||||| |
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| T |
28054529 |
aagaacaaaagctttaacgatcttccgctattaattacatccattaaataactaatggaattttc-catggcctgcaaattacttctgagtttgttggta |
28054431 |
T |
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| Q |
155 |
attctaaatcaggaacattttcaataagttcattctc |
191 |
Q |
| |
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| T |
28054430 |
tttttaaatatggaacattttcaataagttcattctc |
28054394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 28064954 - 28064819
Alignment:
| Q |
55 |
aagaacataagcattaatgatcttcagctattaattgcatcaattaaatatctaactcaattcaaacatggcatagaaatcacttttaagtttgttggta |
154 |
Q |
| |
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||||||| |||| |||| ||||||| |||||||||| |||| |||||||| |||| |||| |||||| | |||| |||| | |||||||||||| |
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| T |
28064954 |
aagaacaaaagctttaacgatcttccgctattaattacatccattaaataactaatggaattttc-catggcctgcaaattacttctgagtttgttggta |
28064856 |
T |
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| Q |
155 |
attctaaatcaggaacattttcaataagttcattctc |
191 |
Q |
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| T |
28064855 |
tttttaaatatggaacattttcaataagttcattctc |
28064819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 28134753 - 28134715
Alignment:
| Q |
52 |
aacaagaacataagcattaatgatcttcagctattaatt |
90 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |
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| T |
28134753 |
aacaagaacataagcattaatgatcttaagctattaatt |
28134715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 8693028 - 8693077
Alignment:
| Q |
52 |
aacaagaacataagcattaatgatcttcagctattaattgcatcaattaa |
101 |
Q |
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|||||||||| |||||||||||||||||| ||||||||| |||||||||| |
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| T |
8693028 |
aacaagaacagaagcattaatgatcttcacctattaattacatcaattaa |
8693077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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