View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1516_low_6 (Length: 562)
Name: NF1516_low_6
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 21)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 28214389 - 28213918
Alignment:
| Q |
1 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214389 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgt |
28214290 |
T |
|
| Q |
101 |
catacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28214289 |
catacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagattgttgagaggaagagggttattgtttgctga |
28214190 |
T |
|
| Q |
201 |
tcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214189 |
tcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatg |
28214090 |
T |
|
| Q |
301 |
aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatatttca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214089 |
aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtgtcgtaagctcttaagcgagttggttcatatatttca |
28213990 |
T |
|
| Q |
401 |
ttctagtttagcaaatttgttctcttccgatgtaagtttctcatacacatttgagggtagttttggccatgt |
472 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28213989 |
ttctggtttagcaaatttgttctcttcttatgtaagtttctcacacacatttgagggtagttttggccatgt |
28213918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 32306314 - 32306858
Alignment:
| Q |
1 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaata---acaaaggga |
97 |
Q |
| |
|
|||||| ||| |||||| ||| ||| ||||||||| | |||||||||||||||||||||||||||| | |||| ||||||||||| || ||||||||| |
|
|
| T |
32306314 |
cctgactacagtaagaacaatatcaacagcaacggcacgttttcgacgtttacagtttcaaagccagtaaatgctcatcactctagtagtgacaaaggga |
32306413 |
T |
|
| Q |
98 |
tgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgc |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32306414 |
tgtcatacatgcaagcattgtcatctgcagtgccatctggagcatattttgacactcactactatcagagtttgttgagaggaagagggttattgttttc |
32306513 |
T |
|
| Q |
198 |
tgatcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatg |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306514 |
tgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatg |
32306613 |
T |
|
| Q |
298 |
atgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatatt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
32306614 |
ttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaaactcttaagtgagttggttcatatatt |
32306713 |
T |
|
| Q |
398 |
tcattctagtttagcaaatttgttctcttccgatgtaagtttctcatacacatttgagggtagttttggccatgtaaagttacagcttttacagaattta |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306714 |
tcattctagtttagcaaatttgttctcttcctatgtaagtttctcatacacattttagggtagttttggccatgtaaagttacagcttttacagaattta |
32306813 |
T |
|
| Q |
498 |
ttgattttgatggccataatgtttgatgaatacatactagtaagc |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306814 |
ttgattttgatggccataatgtttgatgaatacatactagtaagc |
32306858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 32310447 - 32310957
Alignment:
| Q |
1 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgt |
100 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||| | ||||||| ||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
32310447 |
cctgacaacagtaagaacaatttcagcagcaacggcacgttttcgtcgtttacagcttcaaagccaatgaacgttcatcactctaatgacaaagggatgt |
32310546 |
T |
|
| Q |
101 |
catacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310547 |
catacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
32310646 |
T |
|
| Q |
201 |
tcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32310647 |
tcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttg |
32310746 |
T |
|
| Q |
301 |
aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatatttca |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
32310747 |
aaattgtctaacctcgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttca |
32310846 |
T |
|
| Q |
401 |
ttctagtttagcaaatttgttctcttccgatgtaagtttctcatacacatttgagggtagttttggccatgtaaagttacagcttttacagaatttattg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
32310847 |
ttctagtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagctgttacagaatttattg |
32310946 |
T |
|
| Q |
501 |
attttgatggc |
511 |
Q |
| |
|
||||||||||| |
|
|
| T |
32310947 |
attttgatggc |
32310957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 28221895 - 28222366
Alignment:
| Q |
1 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28221895 |
cctgacaacaataagaataatgtcatcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgt |
28221994 |
T |
|
| Q |
101 |
catacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28221995 |
catacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
28222094 |
T |
|
| Q |
201 |
tcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28222095 |
tcaacagctgatggcttaagagaagactgccatattggtttttgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttg |
28222194 |
T |
|
| Q |
301 |
aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatatttca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28222195 |
aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtgtcgtaagctcttaagcgagttggttcatatatttca |
28222294 |
T |
|
| Q |
401 |
ttctagtttagcaaatttgttctcttccgatgtaagtttctcatacacatttgagggtagttttggccatgt |
472 |
Q |
| |
|
|||| | |||||||||| |||||||||| |||||||||||| | |||||||||| ||||||||| ||||||| |
|
|
| T |
28222295 |
ttctggcttagcaaattggttctcttcctatgtaagtttcttacacacatttgatggtagttttagccatgt |
28222366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 32786828 - 32786342
Alignment:
| Q |
1 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaata---acaaaggga |
97 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
32786828 |
cctgacaacagtaagaataatatcagcagcaacggcacgttttcgacgtttacaatttcaaagaaaatgaatgttcatcactctagtagtgacaaaggga |
32786729 |
T |
|
| Q |
98 |
tgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgc |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786728 |
tgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgc |
32786629 |
T |
|
| Q |
198 |
tgatcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatg |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786628 |
tgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatg |
32786529 |
T |
|
| Q |
298 |
atgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatatt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
32786528 |
ttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccatcttgtaagctcttaagtgagtcggttcatatatt |
32786429 |
T |
|
| Q |
398 |
tcattctagtttagcaaatttgttctcttccgatgtaagtttctcatacacatttgagggtagttttggccatgtaaagttacagct |
484 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
32786428 |
tcattctggtttagcaaatttgttctcttcctatgtaagtttctcacacatattttagggtggttttggccatgtaaagtgacagct |
32786342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 32564373 - 32563891
Alignment:
| Q |
1 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgt |
100 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||| | ||||||| ||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
32564373 |
cctgacaacagtaagaacaatttcagcagcaacggcacgttttcgtcgtttacagcttcaaagccaatgaacgttcatcactctaatgacaaagggatgt |
32564274 |
T |
|
| Q |
101 |
catacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564273 |
catacatgcaagcattgtcatctgcagttccatctggagcattttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
32564174 |
T |
|
| Q |
201 |
tcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
32564173 |
tcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatctacctttcggatggatttcgcaagggttatgttg |
32564074 |
T |
|
| Q |
301 |
aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatatttca |
400 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
32564073 |
aaattgtctaaccttgatgttttgacttgaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttca |
32563974 |
T |
|
| Q |
401 |
ttctagtttagcaaatttgttctcttccgatgtaagtttctcatacacatttgagggtagttttggccatgtaaagttacagct |
484 |
Q |
| |
|
|||| |||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32563973 |
ttctggtttagaaaatttgtt-ttttccaatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagct |
32563891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 32814036 - 32813598
Alignment:
| Q |
1 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgt |
100 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
32814036 |
cctgacaacagtaagaacaatttcagcagcaacggcacgttttcgacgtttacagcttcaaagccaatgaatgttcaactctctaatgacaaagggatgt |
32813937 |
T |
|
| Q |
101 |
catacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813936 |
catacatgcaagcattgtcatctgcagtaccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctga |
32813837 |
T |
|
| Q |
201 |
tcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32813836 |
tcaacagctgatggctcaagagaagactgccagattggtttttgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttg |
32813737 |
T |
|
| Q |
301 |
aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatatttca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
32813736 |
aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatataattca |
32813637 |
T |
|
| Q |
401 |
ttctagtttagcaaatttgttctcttccgatgtaagttt |
439 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||| |||||| |
|
|
| T |
32813636 |
ttctggtttagaaaatttgttctcttcctatgcaagttt |
32813598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 197 - 475
Target Start/End: Complemental strand, 32793012 - 32792734
Alignment:
| Q |
197 |
ctgatcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttat |
296 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32793012 |
ctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttat |
32792913 |
T |
|
| Q |
297 |
gatgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatat |
396 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
32792912 |
gttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatat |
32792813 |
T |
|
| Q |
397 |
ttcattctagtttagcaaatttgttctcttccgatgtaagtttctcatacacatttgagggtagttttggccatgtaaa |
475 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792812 |
ttcattctagtttatcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaa |
32792734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 239 - 498
Target Start/End: Complemental strand, 32799638 - 32799379
Alignment:
| Q |
239 |
tttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatgaaattgtctaaccttgatgttttgactggaaatcaagg |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799638 |
tttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
32799539 |
T |
|
| Q |
339 |
tcaggttcgtctgaattgctcccgtctcgtaagctcttaagcgagttggttcatatatttcattctagtttagcaaatttgttctcttccgatgtaagtt |
438 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32799538 |
tcaggttcgtctgaattgctcccgtcttgtaagctcttaagtgagttggttcatatatttcattctagtttagcaaatttgttctcttcctatgtaagtt |
32799439 |
T |
|
| Q |
439 |
tctcatacacatttgagggtagttttggccatgtaaagttacagcttttacagaatttat |
498 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
32799438 |
tctcatacacattttagggtagttttggccatgtaaagtgacagctattatagaatttat |
32799379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 182 - 356
Target Start/End: Original strand, 28158816 - 28158990
Alignment:
| Q |
182 |
gagggttattgtttgctgatcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctttcggatgga |
281 |
Q |
| |
|
||||| || |||| ||| |||||||||| ||||||| |||||| || || | |||| |||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
28158816 |
gagggctactgttcgctaatcaacagctcatggctggagagaacactgctagattgatttctgctaatgcttccgatgacggatcaacctttcggatgga |
28158915 |
T |
|
| Q |
282 |
tttcgcaagggttatgatgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattg |
356 |
Q |
| |
|
||| |||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28158916 |
tttggcaagggtggtgttgaaattgtctaatattgatgttttgactggaaataaaggtcaggttcgtctgaattg |
28158990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 78 - 404
Target Start/End: Original strand, 28177370 - 28177707
Alignment:
| Q |
78 |
tcactctaataacaaagggatgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactcactactatcagagtttgttgaga |
177 |
Q |
| |
|
||||||||| | |||| ||||||| || |||||| ||||||||||||||||||||| |||||| ||||||||| | |||| |||||| || ||| |
|
|
| T |
28177370 |
tcactctaacataaaagtgatgtcaggcatgcaagcgttgtcatctgcagtgtcatcttaagcatcatttgacacttgatgatatccgagtttattaaga |
28177469 |
T |
|
| Q |
178 |
ggaagagggt-----tattgtttgctgatcaacagctgatggctgaagagaagacagccaaattggtttctgcttatgcttcagatgacggatcaacctt |
272 |
Q |
| |
|
||||||||| || |||| ||| |||||||||||||||||| ||||| | || | ||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
28177470 |
ggaagaggggagggctactgttcgctaatcaacagctgatggctggagagagcagtgctaggttgatttctgctaatgcttccgatgacggatcaacctt |
28177569 |
T |
|
| Q |
273 |
tcggatggatttcgcaagggttatgatg------aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctcccgtctc |
366 |
Q |
| |
|
|||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
28177570 |
tcggatggattttgcaagggtggtgttggagttcaaattgtctaatcttgatgttttgactggaaatcaaggtcaggttcgtctgaattgttcccaaatt |
28177669 |
T |
|
| Q |
367 |
gtaagctcttaagcgagttggttcatatatttcattct |
404 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| ||||| |
|
|
| T |
28177670 |
ataagttcttaactgagttggttgatatatttaattct |
28177707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 32317414 - 32317567
Alignment:
| Q |
1 |
cctgacaacaataagaataatgtcagcagcaacggaatgttttcgacgtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgt |
100 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||| | | ||||||||| ||| ||||||||||||||| ||||| |||||||||||||| |||||||| | |
|
|
| T |
32317414 |
cctgacaacaattagaataatatcagcaacaacagtacattttcgacggttatagtttcaaagccaattaatgtccatcactctaataataaagggatat |
32317513 |
T |
|
| Q |
101 |
catacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactca |
155 |
Q |
| |
|
||||| |||||| ||||||| ||||||| ||||| | |||||||||||||||| |
|
|
| T |
32317514 |
catacgcgcaagctttgtcatatgcagtgccatct-taacatcttttgacactca |
32317567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 28161723 - 28161798
Alignment:
| Q |
286 |
gcaagggttatgatgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctccc |
361 |
Q |
| |
|
|||||| || || ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
28161723 |
gcaaggattgtgttgaaattgtctaatattgatgttttgactggaaatcaaggtcaggtttgtctgaattgttccc |
28161798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 28171760 - 28171835
Alignment:
| Q |
286 |
gcaagggttatgatgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctgaattgctccc |
361 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
28171760 |
gcaagggtggtgttgaaattgtctaatgttgatgttttgactggaaatcaaggtcaggttcatctgaattgttccc |
28171835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 28158711 - 28158788
Alignment:
| Q |
78 |
tcactctaataacaaagggatgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactca |
155 |
Q |
| |
|
||||||||| | |||| |||||||| || ||||| ||||| |||||||||||||||| |||||| ||||||||||| |
|
|
| T |
28158711 |
tcactctaacagaaaagtgatgtcatgcatgcaagagttgtcgtctgcagtgtcatctgaagcatcatttgacactca |
28158788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 28169280 - 28169357
Alignment:
| Q |
78 |
tcactctaataacaaagggatgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatcttttgacactca |
155 |
Q |
| |
|
||||||||| | |||| |||||||| || ||||| ||||| |||||||||||||||| |||||| ||||||||||| |
|
|
| T |
28169280 |
tcactctaacagaaaagtgatgtcatgcatgcaagagttgtcgtctgcagtgtcatctgaagcatcatttgacactca |
28169357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 32799183 - 32799150
Alignment:
| Q |
511 |
ccataatgtttgatgaatacatactagtaagcag |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32799183 |
ccataatgtttgatgaatacatactagtaagcag |
32799150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 28183155 - 28183206
Alignment:
| Q |
78 |
tcactctaataacaaagggatgtcatacaagcaagcattgtcatctgcagtg |
129 |
Q |
| |
|
||||||||| || |||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
28183155 |
tcactctaacaaaaaagggatgtcatacatggaagcgttgtcatctgcagtg |
28183206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Complemental strand, 32813602 - 32813551
Alignment:
| Q |
459 |
agttttggccatgtaaagttacagcttttacagaatttattgattttgatgg |
510 |
Q |
| |
|
||||||||||||||||| | ||| | ||||||||||||||||||||||||| |
|
|
| T |
32813602 |
agttttggccatgtaaaatgacaaatgttacagaatttattgattttgatgg |
32813551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 32790283 - 32790250
Alignment:
| Q |
511 |
ccataatgtttgatgaatacatactagtaagcag |
544 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
32790283 |
ccataatgtttaatgaatacatactagtaagcag |
32790250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 32812420 - 32812387
Alignment:
| Q |
511 |
ccataatgtttgatgaatacatactagtaagcag |
544 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
32812420 |
ccataatgtttaatgaatacatactagtaagcag |
32812387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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