View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_7 (Length: 493)
Name: NF1516_low_7
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 4652054 - 4651781
Alignment:
| Q |
1 |
tacaatacaattatactagaaacccacgtaacaaagagagacaccaagaattggggatcctttaattcatttatactccatcaaactgctacactacatt |
100 |
Q |
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| T |
4652054 |
tacaatacaattatactagaaacccacgtaacaaagagagacaccaagaattggggatcctttaattcatttatactccatcaaactgctacactacatt |
4651955 |
T |
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| Q |
101 |
tagaaactgattttgtaaggtggtaacccactgtttgttcaaattcagatgcaaatcccacaccaattttctcaacatagcaatattggtatatttagac |
200 |
Q |
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| T |
4651954 |
tagaaactgattttgtaaggtggtaacccactgtttgttcaaattcagatgcaaatcccacaccaattttctcaacatagcaatattggtatatttagac |
4651855 |
T |
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| Q |
201 |
tttctattaaaccttccaattaaagaatcatatttaactgatacaaaacacaagaaaacagagcatattgcatt |
274 |
Q |
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| T |
4651854 |
tttctattaaaccttccaattaaagaatcatatttaactgatacaaaacacaagaaaacagagcatattgcatt |
4651781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 356 - 477
Target Start/End: Complemental strand, 4651703 - 4651582
Alignment:
| Q |
356 |
ttgacgagagattccatgaaatttctaattccttgctttgaggacttgtgaactatattaaaattaggggaaactaaaatttgttgcagaaccttaaaat |
455 |
Q |
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| T |
4651703 |
ttgacgagagattccatgaaatttctaattccttgctttgaggacttgtgaactatatgaaaattaggggaaactaaaatttgttgcagaaccttaaaat |
4651604 |
T |
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| Q |
456 |
cgatcctttcaacctataatct |
477 |
Q |
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| T |
4651603 |
cgatcctttcaacctataatct |
4651582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 5571355 - 5571538
Alignment:
| Q |
5 |
atacaattatactagaaacccacgtaacaaagagagacaccaagaattggggatcctttaattcatttatactccatcaaactgctacactacatttaga |
104 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||| | |
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| T |
5571355 |
atacaattatactagaaacccacataacaaagaaagacaccaagaaatggggatcctttatttcatttagactccatcaaactgctacacttcat----a |
5571450 |
T |
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| Q |
105 |
aactgattttgtaaggtggtaacccactgtttgttcaaattcagatgcaaatcccacaccaattttctcaacatagcaatattggtatat |
194 |
Q |
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||| || |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
5571451 |
aacggactttgtacggtggtaa-ccattgtttgttcaaattcagatgcaaatcccacaccaa-tttctcaacatagcaatattagtatat |
5571538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 19237929 - 19238010
Alignment:
| Q |
106 |
actgattttgtaaggtggtaacccactgtttgttcaaattcagatgcaaatcccacaccaattttctcaacatagcaatatt |
187 |
Q |
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||||||||| |||| ||| ||||| | ||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
19237929 |
actgattttttaagatggccacccattattttctcaaattcagatgcaaatcccacaccattttattcaacatagcaatatt |
19238010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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