View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_8 (Length: 480)
Name: NF1516_low_8
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 21592236 - 21592697
Alignment:
| Q |
1 |
aagaaaatgaggctttgtatcatgcacaacaagaacgaccttgccttcatcctcatcatcaaattcagtcttaacctctgtgcctctaacagcacctgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21592236 |
aagaaaatgaggctttgtatcatgcacaacaagaacgaccttgccttcatcctcatcatcaaattcagtcttaacctctatgcctctaacagcacctgat |
21592335 |
T |
|
| Q |
101 |
ctcagcagctgccgatcttcccatcgagcattatcagttgtaagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21592336 |
ctcagcagctgccgatcttcccatcgagcattatcagt---aagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggacca |
21592432 |
T |
|
| Q |
201 |
atcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcctctct |
300 |
Q |
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| T |
21592433 |
atcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcctctct |
21592532 |
T |
|
| Q |
301 |
atcataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatt |
400 |
Q |
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| T |
21592533 |
atcataccatgctcggtctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatt |
21592632 |
T |
|
| Q |
401 |
tcctcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagattt |
465 |
Q |
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| T |
21592633 |
tcctcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagattt |
21592697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 42096685 - 42096509
Alignment:
| Q |
23 |
tgcacaacaagaacgaccttgccttcatcctcatcatcaaattcagtcttaacctctgtgcctctaacagcacctgatctcagcagctgccgatcttccc |
122 |
Q |
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||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42096685 |
tgcacaagaagaatgaccttgcgttcatcctcatcatcaaattcagtctgaacctctgtgcctctaacagcgcctgatctcagcagctgccgatcttccc |
42096586 |
T |
|
| Q |
123 |
atcgagcattatcagttgtaagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggacc |
199 |
Q |
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| T |
42096585 |
attgagcattatccgctgtaagctgagacaatttcttgctttgagaaagggacatcttagtcccatctcttcggacc |
42096509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 303 - 407
Target Start/End: Complemental strand, 42095475 - 42095371
Alignment:
| Q |
303 |
cataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttc |
402 |
Q |
| |
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||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
42095475 |
cataccatgctcggtctgcatcatattccatctcttgacgcatgctttcagtaatctcatacttgtgttcttcacccaagtcagatttatctgctatttc |
42095376 |
T |
|
| Q |
403 |
ctcct |
407 |
Q |
| |
|
||||| |
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| T |
42095375 |
ctcct |
42095371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 308
Target Start/End: Complemental strand, 42095685 - 42095574
Alignment:
| Q |
197 |
accaatcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcct |
296 |
Q |
| |
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|||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||||| |
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| T |
42095685 |
accagtcttttggccaactcggcctcctttttctgaaatgaagcctcatctccaagaaaaagtgaagagctatcagaatcaaacaatgcgctgccttcct |
42095586 |
T |
|
| Q |
297 |
ctctatcatacc |
308 |
Q |
| |
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|||||||||||| |
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| T |
42095585 |
ctctatcatacc |
42095574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 42095259 - 42095204
Alignment:
| Q |
410 |
tctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagattt |
465 |
Q |
| |
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||||||||||| || ||||||||| | |||||||||||||||| |||||||||||| |
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| T |
42095259 |
tctgaagaaaaggcaagtttatgcgaccttcgattatatccagaaacagaagattt |
42095204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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