View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15171_high_1 (Length: 282)
Name: NF15171_high_1
Description: NF15171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15171_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 51667380 - 51667638
Alignment:
| Q |
11 |
ttattcttctgctttattttgannnnnnngacagttagcgaggttcttttgtctctaagatttatttttgcagtttagattagtttcattctttcacaat |
110 |
Q |
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| T |
51667380 |
ttattcttctgctttattttgagttttttgacagttagcgaggttcttttgtctctaagatttatttttgcagtttagattagtttcattctttcacaat |
51667479 |
T |
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| Q |
111 |
caaagcaaaattggcttccatcatttaatgtaat-catcactattttgcatgcaggcagtgaatgtaattcttcaacattgacatttgatggtgttgatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51667480 |
caaagcaaaattggcttccatcatttaatgtaatgcatcactattttgcatgcaggcagtgaatgtaattcttcaacattgacatttgatggtgttgatg |
51667579 |
T |
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| Q |
210 |
taacgggaaatagattagcagaggaggtgtgtgatgtctttggcaattgactctaatct |
268 |
Q |
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| T |
51667580 |
taacgggaaatagattagcagaggaggtgtgtgatgtctttggcatttgactctaatct |
51667638 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 53603114 - 53603160
Alignment:
| Q |
162 |
caggcagtgaatgtaattcttcaacattgacatttgatggtgttgat |
208 |
Q |
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| T |
53603114 |
caggcagtgaatgcaattcttcaaaattgacatttgatggtgttgat |
53603160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 274061 - 274020
Alignment:
| Q |
227 |
gcagaggaggtgtgtgatgtctttggcaattgactctaatct |
268 |
Q |
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| T |
274061 |
gcagaggaggtatgtgatgtctttggcatttgactctaatct |
274020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 874149 - 874190
Alignment:
| Q |
227 |
gcagaggaggtgtgtgatgtctttggcaattgactctaatct |
268 |
Q |
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| T |
874149 |
gcagaggaggtatgtgatgtctttggcatttgactctaatct |
874190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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