View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15171_low_6 (Length: 237)
Name: NF15171_low_6
Description: NF15171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15171_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14902961 - 14902739
Alignment:
| Q |
1 |
ataggcagatgcataattccaagcgatatacgtattagatcaaatactatgatttaataattgataaacaaaaaatatatattaatcgatggttacttag |
100 |
Q |
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| T |
14902961 |
ataggcagatgcataattccaagcgatatacgtattagatcaaatactatgatttaataattaataaacaaaaaatatatattaatcgatggttacttag |
14902862 |
T |
|
| Q |
101 |
gacaacaaaaagattatgagtgaaattaaaatacggaaagaaaacaaagtata-----tagagtagccaacagggtttacacagccaattctaacaacat |
195 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
14902861 |
gacaacaaaaagattatgagtgaaattaaaatacagaaagaaaacaaagtatatagattagagtagccaacagggtttacacagccaattct---aacat |
14902765 |
T |
|
| Q |
196 |
ccagcaaatcaaaataatgaaacact |
221 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
14902764 |
ccagcaaatcaaaataatgaaacact |
14902739 |
T |
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