View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15172_high_1 (Length: 537)
Name: NF15172_high_1
Description: NF15172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15172_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 6 - 514
Target Start/End: Complemental strand, 52584175 - 52583650
Alignment:
| Q |
6 |
cgttctacttctacttcttatggaagtgagagttttggttccgttattgggaactctagataccttaaaccagtacagtcacttcttgaagatcttgttg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584175 |
cgttctacttctacttcttatggaagtgagagttttggttctgttattgggaactctagataccttaaaccagtacagtcacttcttgaagatcttgttg |
52584076 |
T |
|
| Q |
106 |
atgttggtagaaatgtgattgatagaatgaatgaaaaatatgctgagaagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaa |
205 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584075 |
atgttggtggaaatgtgattgatagaatgaatgaaaaatatgctgagaagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaa |
52583976 |
T |
|
| Q |
206 |
agcagagttgaggattcatggacatttattggctgacaaacatgaacatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583975 |
agcagagttgaggattcatggacatttattggctgacaaacatgaacatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtct |
52583876 |
T |
|
| Q |
306 |
tct-----cttcctgattttatgttcactagtactaataaagaaaattgcatcatacttgagtagtattcg------------aattaagtgctagagtt |
388 |
Q |
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| T |
52583875 |
tctcttctcttcctgattttatgttcactagtactaataaagaaaattgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagtt |
52583776 |
T |
|
| Q |
389 |
tatcaaataagtgtttatgtataaattatttttaaaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaattt |
488 |
Q |
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| T |
52583775 |
tatcaaataagtgtttatgtataaattatttttaaaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaattt |
52583676 |
T |
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| Q |
489 |
atagacatggtataagctatttctat |
514 |
Q |
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| T |
52583675 |
atagacatggtataagctatttctat |
52583650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 487
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
423 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
487 |
Q |
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| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
388 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
430 |
Q |
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| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
388 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
430 |
Q |
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|||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
395 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
431 |
Q |
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|||||||||||||||||| ||||||||| |||||||| |
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| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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