View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15172_low_3 (Length: 353)
Name: NF15172_low_3
Description: NF15172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15172_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 39816043 - 39815708
Alignment:
| Q |
1 |
tacatagtttataactcaagaattcatgcataaattccaatgtatacggcataatggaaattatcatgcttctgtgattgaaaaacaggaattacgcgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39816043 |
tacatagtttataactcaagaattcatgcataaattccaatgtatacggcataatggaaattatcatgcttctgtgattgaaaaacaggaattacgcgac |
39815944 |
T |
|
| Q |
101 |
aatcattcacccccgcttcgtgtcttgttcagccctcactagatcgcatctcatctccctgtccaaaccaaatcgcgtaccaaacctcatccatatcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39815943 |
aatcattcacccccgcttcgtgtcttgttcagccctcactagatcgcatctcatctccctgtccaaaccaaatcgtgtaccaaacctcatccatatcatt |
39815844 |
T |
|
| Q |
201 |
ttgttctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaatcatgttttggttgaaatttataacata |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39815843 |
ttgttctctttgaaactgtaagaatatgcttactcccgctactttgtttatgttattgatgaatgattgcaatcatgttttggttgaaatttataacata |
39815744 |
T |
|
| Q |
301 |
atcgtatgagttatgatattgatccttaagatcagt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
39815743 |
atcgtatgagttatgatattgatccttaagatcagt |
39815708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 39806782 - 39806472
Alignment:
| Q |
7 |
gtttataactcaagaattcatgcataaattccaatgtatacggcataatggaaattatcatgcttctgtgattgaaaaacaggaattacgcgacaatcat |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
39806782 |
gtttataactcaaaaattcatgcataaattccaatgtgtagggaataatggaaattatcatgcttctgagattgaaaaacaggaattatgcggcaatcat |
39806683 |
T |
|
| Q |
107 |
tcacccccgcttcgtgtcttgttcagccctcacta-------gatcgcatctcatctccctgtccaaaccaaatcgcgtacca-----aacctcatccat |
194 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||| || ||||| |
|
|
| T |
39806682 |
tcacctccgcttcgcgtcttgttcagccctcactagaagctcgatcgcatctcatctccctgtcctcaccaaatcgcgtacgaacaacaacatcctccat |
39806583 |
T |
|
| Q |
195 |
atcattttgttctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaatcatgttttggttgaaatttat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | || ||||| |||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39806582 |
atcattttgttctctttgaaactgtaagaatatgcttactccctcaacattgtt--tgttatcgatgaatgattacaatcatgttttggttgaaatttat |
39806485 |
T |
|
| Q |
295 |
aacataatcgtat |
307 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
39806484 |
aacataatagtat |
39806472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 39923317 - 39923033
Alignment:
| Q |
1 |
tacatagtttataactcaagaattcatgcataaattccaatgtatacggcataatggaaattatcatgcttctgtgattgaaaaacaggaattacgcgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||| | |
|
|
| T |
39923317 |
tacatagtttataactcaagaattcaagtatgaattccaatgtgtagggaataatggaaattatcatgcttctgagattgaaaaacaggaattatgcgcc |
39923218 |
T |
|
| Q |
101 |
aatcattcacccccgcttcgtgtcttgttcagccctcacta-------gatcgcatctcatctccctgtccaaaccaaatcgcgtac-----caaacctc |
188 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||| |||||| ||||||| || ||| ||||||| |
|
|
| T |
39923217 |
aatcattcacctccgcttcacgtcttgttcagccctcgctagaagctcgatcgcatctcatctcactgtcctcaccaaattgcatacaaacagaaacctc |
39923118 |
T |
|
| Q |
189 |
atccatatcattttgttctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39923117 |
atccatatcattttgttctctttgaaactgtaagaacatgcttactccctctactttgtttatgttattgatgaatgattgcaat |
39923033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 39903642 - 39903504
Alignment:
| Q |
1 |
tacatagtttataactcaagaattcatgcataaattccaatgtatacggcataatggaaattatcatgcttctgtgattgaaaaacaggaattacgcgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || || | |||||||||||||||||||||| ||||||||||||||||||| || || |
|
|
| T |
39903642 |
tacatagtttataactcaagaattcatgcataaattccaatgtgtagggaacaatggaaattatcatgcttctgagattgaaaaacaggaattatgcaac |
39903543 |
T |
|
| Q |
101 |
aatcattcacccccgcttcgtgtcttgttcagccctcac |
139 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
39903542 |
aatcattcacctccgcttcgcgtcttgttcatccctcac |
39903504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 183 - 323
Target Start/End: Complemental strand, 4753752 - 4753614
Alignment:
| Q |
183 |
aacctcatccatatcattttgttctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaatcatgttttg |
282 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||| |||| || |||| |
|
|
| T |
4753752 |
aacctcatccctctcatttccctctctttgaaactgtaagaatatgcttaatccctctattttgtttatgttattgatgaatgatttcaattgtg-tttg |
4753654 |
T |
|
| Q |
283 |
gttgaaatttataacataatcgtatgagttatgatattgat |
323 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
4753653 |
gttg-catttatatcataatagtatgagttatgatattgat |
4753614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 4740627 - 4740560
Alignment:
| Q |
205 |
tctctttgaaactgtaagaacatgcttactcccgctactttgtttatgttattgatgaatgattgcaa |
272 |
Q |
| |
|
|||||||||||| ||||||| |||| || ||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
4740627 |
tctctttgaaaccgtaagaatatgcctattccttctactttgtttatgttattgatgattgattgcaa |
4740560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University