View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15172_low_4 (Length: 224)

Name: NF15172_low_4
Description: NF15172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15172_low_4
NF15172_low_4
[»] chr6 (3 HSPs)
chr6 (33-174)||(32817949-32818090)
chr6 (64-174)||(14495904-14496014)
chr6 (34-76)||(19757126-19757168)
[»] chr7 (3 HSPs)
chr7 (33-174)||(46459420-46459561)
chr7 (33-169)||(43637918-43638054)
chr7 (54-174)||(41988520-41988640)
[»] chr1 (7 HSPs)
chr1 (34-174)||(46600822-46600962)
chr1 (34-177)||(46086133-46086276)
chr1 (89-168)||(5132101-5132180)
chr1 (89-168)||(31492373-31492452)
chr1 (63-168)||(4796163-4796268)
chr1 (1-29)||(40328366-40328394)
chr1 (179-207)||(44513346-44513374)
[»] chr4 (3 HSPs)
chr4 (34-173)||(50382516-50382654)
chr4 (119-177)||(23126827-23126885)
chr4 (141-182)||(44937659-44937700)
[»] chr5 (3 HSPs)
chr5 (95-174)||(38760751-38760830)
chr5 (175-207)||(26113648-26113680)
chr5 (33-73)||(38760835-38760875)
[»] chr3 (2 HSPs)
chr3 (57-157)||(8322728-8322828)
chr3 (100-177)||(46111000-46111073)
[»] chr2 (3 HSPs)
chr2 (89-168)||(32865457-32865536)
chr2 (174-207)||(38993394-38993427)
chr2 (112-174)||(20365730-20365792)
[»] scaffold0188 (1 HSPs)
scaffold0188 (174-207)||(28315-28348)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 32818090 - 32817949
Alignment:
Q  33 taaaaaggtggtaggactcacctatttttattctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttca 132  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||    
T  32818090 taaaaaggtggtaggacccacctatttttattctctcttcacaatttctttgctatccaaacaagagaagtttggtacttctcctctatttctatctaca 32817991  T
Q  133 ctaactcgctcttccctaattctctccaaccaaacagagtgt 174  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  32817990 ctaactctctcttccctaattctctccaaccaaacaaagtgt 32817949  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 14496014 - 14495904
Alignment:
Q  64 tctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttcactaactcgctcttccctaattctctccaacc 163  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  |||| || |||||| |||||||||| | ||     
T  14496014 tctctcttgacaatttctttgctatccaaacaagagaagtgtgatacttctcttctatttctctctttgctaattctctcttctctaattctcttctacg 14495915  T
Q  164 aaacagagtgt 174  Q
    ||||| |||||    
T  14495914 aaacatagtgt 14495904  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 19757168 - 19757126
Alignment:
Q  34 aaaaaggtggtaggactcacctatttttattctctcttcacaa 76  Q
    |||||||||||||  | ||||||||||||||||||||||||||    
T  19757168 aaaaaggtggtagagcccacctatttttattctctcttcacaa 19757126  T

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Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 46459561 - 46459420
Alignment:
Q  33 taaaaaggtggtaggactcacctatttttattctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttca 132  Q
    ||||||||||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||    
T  46459561 taaaaaggtggtagggcccacctatttttattctctcttcacaagttctttgccatccaaacaagagaagtatgatacttcttctctatttctctcttca 46459462  T
Q  133 ctaactcgctcttccctaattctctccaaccaaacagagtgt 174  Q
    ||||||| |||||| |||||||||||||| ||||||||||||    
T  46459461 ctaactctctcttctctaattctctccaatcaaacagagtgt 46459420  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 43637918 - 43638054
Alignment:
Q  33 taaaaaggtggtaggactcacctatttttattctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttca 132  Q
    ||||||||||||||| | |||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43637918 taaaaaggtggtagggcccacctatttttattctctcttcacaagttcattgccatccaaacaagagaagtatgatacttctcctctatttctctcttca 43638017  T
Q  133 ctaactcgctcttccctaattctctccaaccaaacag 169  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  43638018 ctaactctctcttctctaattctctccaaccaaacag 43638054  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 41988520 - 41988640
Alignment:
Q  54 ctatttttattctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttcactaactcgctcttccctaatt 153  Q
    ||||||||||||||||||||| |  ||||||  ||||||||||||||||| | ||||| ||| |||||||||||||||| ||||||  ||||| ||||||    
T  41988520 ctatttttattctctcttcacgaactctttgtcatccaaacaagagaagtataatactcctcttctatttctctcttcattaactctttcttctctaatt 41988619  T
Q  154 ctctccaaccaaacagagtgt 174  Q
    |||||||||||||||||||||    
T  41988620 ctctccaaccaaacagagtgt 41988640  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 46600822 - 46600962
Alignment:
Q  34 aaaaaggtggtaggactcacctatttttattctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttcac 133  Q
    ||||||||||||||   ||||||||||||||||||||||||||  ||||| |||||||||||||||||||||| |||||||| | |||||||||||||||    
T  46600822 aaaaaggtggtagggtccacctatttttattctctcttcacaaactctttcctatccaaacaagagaagtttgttacttctcttgtatttctctcttcac 46600921  T
Q  134 taactcgctcttccctaattctctccaaccaaacagagtgt 174  Q
    |||||| ||||||  ||| ||||||||||||||||||||||    
T  46600922 taactctctcttctttaactctctccaaccaaacagagtgt 46600962  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 46086133 - 46086276
Alignment:
Q  34 aaaaaggtggtaggactcacctatttttattctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttcac 133  Q
    |||||||||||||| | |||||||||||||||||| |||||||  ||||| |||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  46086133 aaaaaggtggtagggcccacctatttttattctctattcacaaactctttcctatccaaacaacagaagtttgttacttctcttctatttctctcttcac 46086232  T
Q  134 taactcgctcttccctaattctctccaaccaaacagagtgtaaa 177  Q
    |||||| ||||||  ||| |||||||||||||| ||||||||||    
T  46086233 taactctctcttctttaactctctccaaccaaagagagtgtaaa 46086276  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 5132180 - 5132101
Alignment:
Q  89 ccaaacaagagaagtttgatacttctcctctatttctctcttcactaactcgctcttccctaattctctccaaccaaaca 168  Q
    |||||||||||||||||| |||||||| ||||||||||||||| |||  || ||||| | || ||||||| |||||||||    
T  5132180 ccaaacaagagaagtttgctacttctcttctatttctctcttctctagatctctctttcttatttctctctaaccaaaca 5132101  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 31492452 - 31492373
Alignment:
Q  89 ccaaacaagagaagtttgatacttctcctctatttctctcttcactaactcgctcttccctaattctctccaaccaaaca 168  Q
    |||||||||||||||||| |||||||| | ||||||||||||| |||| || ||||| | || |||||| ||||||||||    
T  31492452 ccaaacaagagaagtttgctacttctcttatatttctctcttctctaaatctctctttcttatttctcttcaaccaaaca 31492373  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 4796163 - 4796268
Alignment:
Q  63 ttctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttcactaactcgctcttccctaattctctccaac 162  Q
    |||||||||| |||||||| | ||  ||||||||||||| | |   ||||||| ||| ||||||||||| ||| ||| |||| | ||| ||||||| |||    
T  4796163 ttctctcttctcaatttctcttcttaccaaacaagagaaatctccaacttctcttctctttctctcttctctatctctctctcctctatttctctcaaac 4796262  T
Q  163 caaaca 168  Q
    ||||||    
T  4796263 caaaca 4796268  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 40328366 - 40328394
Alignment:
Q  1 attttgccaaatggagaggatcttcgccc 29  Q
    |||||||||||||||||||||||||||||    
T  40328366 attttgccaaatggagaggatcttcgccc 40328394  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 44513346 - 44513374
Alignment:
Q  179 gacccgtgcggcgcacgggtcagcgttct 207  Q
    |||||||||||||||||||||||||||||    
T  44513346 gacccgtgcggcgcacgggtcagcgttct 44513374  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 50382516 - 50382654
Alignment:
Q  34 aaaaaggtggtaggactcacctatttttattctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttcac 133  Q
    |||||||||||||| | |||||||||| |||||||||||||||  ||||| || ||||||||||||||||||| |||||||| ||||||| |||||||||    
T  50382516 aaaaaggtggtagggcccacctattttcattctctcttcacaaactctttcctttccaaacaagagaagtttggtacttctcttctatttttctcttcac 50382615  T
Q  134 taactcgctcttccctaattctctccaaccaaacagagtg 173  Q
     ||||| ||||||  |||||||||||||||||||||||||    
T  50382616 -aactctctcttctttaattctctccaaccaaacagagtg 50382654  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 23126885 - 23126827
Alignment:
Q  119 tatttctctcttcactaactcgctcttccctaattctctccaaccaaacagagtgtaaa 177  Q
    ||||||||||||| ||| ||| |||||||||| |||||| ||| |||||| ||||||||    
T  23126885 tatttctctcttccctatctctctcttccctatttctctgcaaacaaacatagtgtaaa 23126827  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 44937659 - 44937700
Alignment:
Q  141 ctcttccctaattctctccaaccaaacagagtgtaaaagacc 182  Q
    |||||||||| |||||| |||||||||||||||||| |||||    
T  44937659 ctcttccctatttctcttcaaccaaacagagtgtaatagacc 44937700  T

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Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 38760830 - 38760751
Alignment:
Q  95 aagagaagtttgatacttctcctctatttctctcttcactaactcgctcttccctaattctctccaaccaaacagagtgt 174  Q
    |||||||||  |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  38760830 aagagaagtacgatacttctcctctatttctctcttcactaactctctcttctctaattctctccaactaaacagagtgt 38760751  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 26113648 - 26113680
Alignment:
Q  175 aaaagacccgtgcggcgcacgggtcagcgttct 207  Q
    |||||||||||||||||||||||||||||||||    
T  26113648 aaaagacccgtgcggcgcacgggtcagcgttct 26113680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 38760875 - 38760835
Alignment:
Q  33 taaaaaggtggtaggactcacctatttttattctctcttca 73  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  38760875 taaaaaggtggtagggcccacctatttttattctctcttca 38760835  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 8322728 - 8322828
Alignment:
Q  57 tttttattctctcttcacaatttctttgctatccaaacaagagaagtttgatacttctcctctatttctctcttcactaactcgctcttccctaattctc 156  Q
    ||||||||||||| |||||| ||||||||||| |||||| ||||| | ||||||||||| ||| ||||||||||||||||||| ||||||  ||||||||    
T  8322728 tttttattctctcctcacaaattctttgctattcaaacaggagaaatatgatacttctcttctctttctctcttcactaactctctcttctttaattctc 8322827  T
Q  157 t 157  Q
    |    
T  8322828 t 8322828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 46111073 - 46111000
Alignment:
Q  100 aagtttgatacttctcctctatttctctcttcactaactcgctcttccctaattctctccaaccaaacagagtgtaaa 177  Q
    |||||||  ||||||| ||||||||||| |||||||||||  |||||  |||  ||||||||||||||||||||||||    
T  46111073 aagtttggcacttctcttctatttctctgttcactaactc--tcttcattaa--ctctccaaccaaacagagtgtaaa 46111000  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 32865457 - 32865536
Alignment:
Q  89 ccaaacaagagaagtttgatacttctcctctatttctctcttcactaactcgctcttccctaattctctccaaccaaaca 168  Q
    |||||||||||||||||| |||||||| |||||||||||||||  ||| || ||||| | || ||||||| ||| |||||    
T  32865457 ccaaacaagagaagtttgttacttctcttctatttctctcttctttaaatctctctttcttatttctctcaaacaaaaca 32865536  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 38993427 - 38993394
Alignment:
Q  174 taaaagacccgtgcggcgcacgggtcagcgttct 207  Q
    ||||||||||||||||||||||||||||||||||    
T  38993427 taaaagacccgtgcggcgcacgggtcagcgttct 38993394  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 20365792 - 20365730
Alignment:
Q  112 tctcctctatttctctcttcactaactcgctcttccctaattctctccaaccaaacagagtgt 174  Q
    |||| |||||||||||||||  |||||| ||| | | || |||||||||||||||||||||||    
T  20365792 tctcttctatttctctcttctttaactctctccttcttatttctctccaaccaaacagagtgt 20365730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 28348 - 28315
Alignment:
Q  174 taaaagacccgtgcggcgcacgggtcagcgttct 207  Q
    |||||||||||||||||||||||||| |||||||    
T  28348 taaaagacccgtgcggcgcacgggtcggcgttct 28315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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