View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15173_high_5 (Length: 315)
Name: NF15173_high_5
Description: NF15173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15173_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 14526668 - 14526954
Alignment:
| Q |
18 |
gaaaagagttcttctaaagttcaaggattgcaagaaaa-atataatctgtgtactaagatcataaatattgtaaacaatataatcaaccaaagaaagtga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14526668 |
gaaaagagttcttctaaagttcaaggattgcaagaaaaaatataatcagtgtactaagatcataaatattgtaaacaatataatcaaccaaagaaagtga |
14526767 |
T |
|
| Q |
117 |
ttcagattggaccatccagaaaatgaagaaaccagtccctctcatattttctcaatgcctcaaactacttctaatcaagtttgtactactatcagaaact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14526768 |
ttcagattggaccatccagaaaatgaagaaaccagtccctctcatattttctcaatgcctcaaactacttctaatcaagtttgtactactatcagaaact |
14526867 |
T |
|
| Q |
217 |
ataatagcagaaccaagagcagagacagttatgataacatgtggccatcaagtagagcataacacaagcatctttgttccgaatttt |
303 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14526868 |
ataatagcagaaccaagagcaaagacagttatgataacatgtggccatcaagtagagcataacacaagcatctttgttccgaatttt |
14526954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University