View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15173_high_9 (Length: 285)
Name: NF15173_high_9
Description: NF15173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15173_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 3187072 - 3186814
Alignment:
| Q |
13 |
atactgaaccattacatatactaagatagtttatttttaattaaagggtccatgtcctaattgtggtactgaaaacacctccttctttgggactatattg |
112 |
Q |
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| T |
3187072 |
atactgaaccattacatatactaagatagtttatttttaattaaagggtccatgtcctaattgtggtactgaaaacacctccttctttgggactatattg |
3186973 |
T |
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| Q |
113 |
tcaatttcaagtggagattccaccaacaaagtcaaatgtgagaagtaagtatgaaaccttttgtgcattattaagtcatgtcattacttccatattcatt |
212 |
Q |
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| T |
3186972 |
tcaatttcaagtggagattccaccaacaaagtcaaatgtgagaagtaagtatgaaaccttttgtgcattattaagtcatgtcattacttccatattcatt |
3186873 |
T |
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| Q |
213 |
ttcttttatcaaattaatatgatatatggtagatacaaatataacaatccaaatttatg |
271 |
Q |
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| T |
3186872 |
ttcttttatcaaattaatatgatatatggtagatacaaatataacaatccaaatttatg |
3186814 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 42463788 - 42463885
Alignment:
| Q |
53 |
ttaaagggtccatgtcctaattgtggtactgaaaacacctccttctttgggactatattgtcaatttcaagtggagattccaccaacaaagtcaaatg |
150 |
Q |
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| T |
42463788 |
ttaaagggtccctgtccaaactgcggaactgaaaatacctccttctttggaacaatactgtcgatttcaagcggtggttccaacaacaaagtcaaatg |
42463885 |
T |
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