View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15173_low_11 (Length: 250)

Name: NF15173_low_11
Description: NF15173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15173_low_11
NF15173_low_11
[»] chr2 (12 HSPs)
chr2 (4-235)||(30437197-30437428)
chr2 (1-235)||(30469005-30469239)
chr2 (1-184)||(30424906-30425089)
chr2 (2-184)||(30430940-30431122)
chr2 (2-171)||(30475968-30476137)
chr2 (21-154)||(8379527-8379660)
chr2 (2-154)||(23783711-23783863)
chr2 (2-152)||(30394934-30395084)
chr2 (2-156)||(30384500-30384654)
chr2 (3-153)||(30483930-30484080)
chr2 (2-154)||(23768208-23768360)
chr2 (21-108)||(30403917-30404004)
[»] chr5 (1 HSPs)
chr5 (2-153)||(41627756-41627907)
[»] chr8 (4 HSPs)
chr8 (2-102)||(15845104-15845204)
chr8 (2-102)||(15852311-15852411)
chr8 (19-102)||(15859298-15859381)
chr8 (2-102)||(15866004-15866104)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 30437197 - 30437428
Alignment:
Q  4 agagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttggc 103  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  30437197 agagacaacttctgttttgcttgtttggacaatagtgttgttgagtaggtaccctgattggcaagcacgtgcaagggaggaagtattacaagtatttggc 30437296  T
Q  104 aacaataaacccgattatgacgggctaagtcatcttaagattgtaagtattgtgttcttcccttcatattaaactatatataacttgatacttacgattg 203  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30437297 aacaataaacccgattttgatgggctaagtcatcttaagattgtaagtattgtgttcttcccttcatattaaactatatataacttcatacttacgattg 30437396  T
Q  204 acataaccttttttgagataggtcacgatgat 235  Q
    |||||||||||||||||| |||||||||||||    
T  30437397 acataaccttttttgagacaggtcacgatgat 30437428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30469005 - 30469239
Alignment:
Q  1 ccaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||| || |||    
T  30469005 ccaagagaccacttctgttttgcttgtttggacaatggtgttattgagtaggtaccccgattggcaagcgcgtgcaagggaagaagtattacaggtcttt 30469104  T
Q  101 ggcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagtattgtgttcttcccttcatattaaactatatataacttgatacttacga 200  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||  | ||||||||||||    
T  30469105 ggcaacaataaacctgattttgacgggctaagtcatcttaagattgtaagtattgtgttctactcttcttattaaacaatatatgccgtgatacttacga 30469204  T
Q  201 ttgacataaccttttttgagataggtcacgatgat 235  Q
    ||||||||||||||||||||| ||||||| |||||    
T  30469205 ttgacataaccttttttgagacaggtcaccatgat 30469239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30424906 - 30425089
Alignment:
Q  1 ccaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30424906 ccaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagttttt 30425005  T
Q  101 ggcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagtattgtgttcttcccttcatattaaactatatat 184  Q
    |||||||||||||| || | |||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||| ||||||    
T  30425006 ggcaacaataaacctgactttgacgggctaagtcatcttaagatcgtaagtattatgtacttcccttcatgttaaacaatatat 30425089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 30430940 - 30431122
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  30430940 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaaccagattggcaagaacgtgcaagggaagaagtattacaagtatttg 30431039  T
Q  102 gcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagtattgtgttcttcccttcatattaaactatatat 184  Q
    ||||||||||||| || | |||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||| ||||||    
T  30431040 gcaacaataaaccagaatttgacgggctaagtcatcttaagatcgtaagtattatgtacttcccttcatgttaaacaatatat 30431122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 30475968 - 30476137
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||  ||||||||||| |||||||| ||||| || |    
T  30475968 caagagaccacttctgttttgcttgtttgggcaatgatgttgttgagtaggtatcctgattggcaagctcgtgcaagggaggaagtattgcaagtcttcg 30476067  T
Q  102 gcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagtattgtgttcttcccttcata 171  Q
    |||| || ||||| |||| ||| || ||||  || |||||||||||||||||||  |||||| |||||||    
T  30476068 gcaataaaaaaccagattttgatggactaaaccaacttaagattgtaagtattgcattcttcacttcata 30476137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 8379660 - 8379527
Alignment:
Q  21 tgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttggcaacaataaacccgatta 120  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||| || ||    
T  8379660 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaaaaaaccagacta 8379561  T
Q  121 tgacgggctaagtcatcttaagattgtaagtatt 154  Q
    ||| || |||| | | ||||||||||||||||||    
T  8379560 tgaaggactaaataaacttaagattgtaagtatt 8379527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 23783863 - 23783711
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    |||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |  ||||||    
T  23783863 caagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcaaggaaggaagtattagagatatttg 23783764  T
Q  102 gcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagtatt 154  Q
    ||||  | |||||||| | ||| || |||| | | ||||||||||||||||||    
T  23783763 gcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagtatt 23783711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 30394934 - 30395084
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    ||||| || ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||  |||||| ||||| ||||| ||||| || ||||    
T  30394934 caagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaaacacgtgctagggaggaagtgttacatgtctttg 30395033  T
Q  102 gcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagta 152  Q
    ||||||| ||||| |||| ||| ||||||| | | || |||||||||||||    
T  30395034 gcaacaaaaaaccagattttgatgggctaaataacctaaagattgtaagta 30395084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 30384500 - 30384654
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    |||||||| ||||| ||||||||||||||||||||| | || ||||||||||||||||||||||||   ||||||||||| ||||| ||||| || ||||    
T  30384500 caagagactacttcggttttgcttgtttggacaatgatattattgagtaggtaccctgattggcaaacccgtgcaagggaggaagtgttacatgtctttg 30384599  T
Q  102 gcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagtattgt 156  Q
    ||||||  ||||| |||| ||| ||||||| | | || ||||| |||||||||||    
T  30384600 gcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgt 30384654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 30483930 - 30484080
Alignment:
Q  3 aagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttgg 102  Q
    |||| |||||||| |||||||||||||||||||| || || ||||||||| ||||| ||||||||| ||||||||| || |||||  ||||||| |||||    
T  30483930 aagaaaccacttcagttttgcttgtttggacaattgtattattgagtaggcaccctaattggcaagcacgtgcaagagaggaagtgctacaagtttttgg 30484029  T
Q  103 caacaataaacccgattatgacgggctaagtcatcttaagattgtaagtat 153  Q
    ||||||  |||| |||| ||| || ||||  ||||||||||||||||||||    
T  30484030 caacaaacaaccagattttgaaggactaaaccatcttaagattgtaagtat 30484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 23768208 - 23768360
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    |||||||| ||||| | ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||  || | ||||||||| |  ||||||    
T  23768208 caagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggcacccagattggcaagaacgtgcccggaaggaagtattagagatatttg 23768307  T
Q  102 gcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagtatt 154  Q
    ||||  | ||||| || | ||| || |||| | | ||||||||||||||||||    
T  23768308 gcaatgaaaaaccagactttgatggactaaataaacttaagattgtaagtatt 23768360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 30403917 - 30404004
Alignment:
Q  21 tgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttggcaacaa 108  Q
    ||||||||||||||||| | ||||||||||| || ||||||||||||| ||| || || || ||||| || ||||| |||||| ||||    
T  30403917 tgcttgtttggacaatgatattgttgagtagatatcctgattggcaagcacgagctagagaggaagttttgcaagtttttggcgacaa 30404004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 41627907 - 41627756
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    |||||||| |||||   ||| ||||||||||||||||| || ||||||||||||||||| ||||||| | | |||||||| |||||||||||| | ||||    
T  41627907 caagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaagcaagggcaagggaggaagtattacaaatctttg 41627808  T
Q  102 gcaacaataaacccgattatgacgggctaagtcatcttaagattgtaagtat 153  Q
    ||||||| |||||  ||| ||| ||||||| | |  | ||||||||||||||    
T  41627807 gcaacaaaaaacctaattttgatgggctaaataacttgaagattgtaagtat 41627756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 15845204 - 15845104
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    ||||||||||||||   |||||| ||||||||||||||||| ||  | ||||| ||||| |||||||||||||||||| | ||||| || ||||| ||||    
T  15845204 caagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagttttgcaagtttttg 15845105  T
Q  102 g 102  Q
    |    
T  15845104 g 15845104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 15852411 - 15852311
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    ||||||||||||||   |||||| ||||||||||||||||| ||  | ||||| ||||| |||||||||||||||||| | ||||| || ||||| ||||    
T  15852411 caagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagttttgcaagtttttg 15852312  T
Q  102 g 102  Q
    |    
T  15852311 g 15852311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 15859381 - 15859298
Alignment:
Q  19 tttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttgg 102  Q
    |||||| ||||||||||||||||| ||  | ||||| ||||| ||||||| |||||||||||| ||||| || ||||| |||||    
T  15859381 tttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagcacgtgcaagggaggaagttttgcaagtttttgg 15859298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 15866104 - 15866004
Alignment:
Q  2 caagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtatttg 101  Q
    ||||||||||| ||   |||||| ||||||||||||||||| ||  | ||||| ||||| ||||||| |||||||||| | ||||| || ||||| ||||    
T  15866104 caagagaccacctcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagcacgtgcaaggcaggaagttttgcaagtttttg 15866005  T
Q  102 g 102  Q
    |    
T  15866004 g 15866004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University