View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15173_low_13 (Length: 239)
Name: NF15173_low_13
Description: NF15173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15173_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30424720 - 30424498
Alignment:
| Q |
1 |
cgctttaacgtctcggtaaatttctttcattctcctatgtgtagtagttggtagaaaccttcaaaataaacataattagtatgtaattcaaatgatctga |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30424720 |
cgctttaacgtctcggtcaatttctttcattctcctatgtgtagtagttggtagaaaccttcaaaataaacataattggtatgtaattcaaatgatctga |
30424621 |
T |
|
| Q |
101 |
atagaatgctatttcattgatcttactcttccaaagtgaacaactcacttcagagtattcaatactataaaccattgattaataaatcaatggttgttat |
200 |
Q |
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| T |
30424620 |
agggaatgctatttccttgatcttactcctccaaagtgaacaactcactttagagtatacaatactataaaccattgattaataaatcaatggttgttat |
30424521 |
T |
|
| Q |
201 |
tacaagcacaagtataacaaacc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
30424520 |
tacaagcacaagtataacaaacc |
30424498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 30430752 - 30430531
Alignment:
| Q |
2 |
gctttaacgtctcggtaaatttctttcattctcctatgtgtagtagttggtagaaaccttcaaaataaacataattagtatgtaattcaaatgatctgaa |
101 |
Q |
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||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30430752 |
gcttttacgtctctttcaatttctttcattctcctatgtgtagtagttggtagaaaccttcaaaataaacataatttttatgtaattcaaatgatctgaa |
30430653 |
T |
|
| Q |
102 |
tagaatgctatttcattgatcttactcttccaaagtgaacaactcacttcagagtattcaatactataaaccattgattaataaatcaatggttgttatt |
201 |
Q |
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| T |
30430652 |
ttgaatgctatttctttgatcttactcttccaaagtgaacaattcactttagagtattcaatactataaaccattgattaattaatcaatggttgttatt |
30430553 |
T |
|
| Q |
202 |
acaagcacaagtataacaaacc |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
30430552 |
acaagcacaagtataacaaacc |
30430531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 30436990 - 30436872
Alignment:
| Q |
19 |
aatttctttcattctcctatgtgtagtagttggtagaaaccttcaaaataaacataattagtat-gtaattcaaatgatctgaatagaatgctatttcat |
117 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| | ||||| | |||| || | |||||| ||||||| |
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| T |
30436990 |
aatttctttcattctcctaggggtagtagttggtagaaaccttcaaaataaacatgattagtctcataattaatgtgatatgtagagaatgttatttcac |
30436891 |
T |
|
| Q |
118 |
tgatcttactcttccaaag |
136 |
Q |
| |
|
|||||||||| ||||||| |
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| T |
30436890 |
ggatcttactcctccaaag |
30436872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 30468810 - 30468740
Alignment:
| Q |
10 |
gtctcggtaaatttctttcattctcctatgtgtagtagttggtagaaaccttcaaaataaacataattagt |
80 |
Q |
| |
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||||| || ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
30468810 |
gtctctgtcaatttctttcattctcctaggtgtagcagtgggtagaaaccttcaaaataaacataattagt |
30468740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 30475763 - 30475702
Alignment:
| Q |
19 |
aatttctttcattctcctatgtgtagtagttggtagaaaccttcaaaataaacataattagt |
80 |
Q |
| |
|
|||||| ||||| |||||||| |||| |||||||||||||| ||||||||| ||||||||| |
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|
| T |
30475763 |
aatttccttcatcctcctatgggtagaggttggtagaaacctgcaaaataaaaataattagt |
30475702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 30475652 - 30475608
Alignment:
| Q |
164 |
actataaaccattgattaataaatcaatggttgttattacaagca |
208 |
Q |
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|||||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
30475652 |
actataaaccgttgattattaaatcaatagttgttattacaagca |
30475608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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