View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15173_low_3 (Length: 344)
Name: NF15173_low_3
Description: NF15173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15173_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 333
Target Start/End: Complemental strand, 9337376 - 9337065
Alignment:
| Q |
22 |
aaaggtttcaagtttcaaagattatttactcaacactagaataaagtctgagaaggatcagatcctaaagtaagctttgaaggatgctgctaaaactaga |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9337376 |
aaaggtttcaagtttcaaagattatttactcaacactagaatagagtctgagaaggatcagatcataaagtaagctttgaaggatgctgctaaaactaga |
9337277 |
T |
|
| Q |
122 |
atagagtttacaatacagaaaatagaaagnnnnnnnnnnnnnnngtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataa |
221 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9337276 |
atagagtttacaatacagaaaacagaaagaaaaacaaaaaaaaagtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataa |
9337177 |
T |
|
| Q |
222 |
taaaactaaaggtctgcattcagcaatttcaaaagcaagacatcactttaaatcttatccaagaaaaataaaattattatccttggatataaggtgcttc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9337176 |
taaaactaaaggtctgcattcagcaatttcaaaagcaagacatcactttaaatcttatccaagaaaaataaaattattagccttggatataaggtgcttc |
9337077 |
T |
|
| Q |
322 |
gacatgctctct |
333 |
Q |
| |
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|||||||||||| |
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| T |
9337076 |
gacatgctctct |
9337065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 166 - 332
Target Start/End: Original strand, 8666246 - 8666412
Alignment:
| Q |
166 |
gtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcaatttcaaaagcaagacatc |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8666246 |
gtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatc |
8666345 |
T |
|
| Q |
266 |
actttaaatcttatccaagaaaaataaaattattatccttggatataaggtgcttcgacatgctctc |
332 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
8666346 |
acttaaaatcttatccaagaaaaataaaattattagccttggatataaggtgtttcgacattctctc |
8666412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 166 - 332
Target Start/End: Complemental strand, 8672410 - 8672244
Alignment:
| Q |
166 |
gtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcaatttcaaaagcaagacatc |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8672410 |
gtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcactttcaaaagcaagacatc |
8672311 |
T |
|
| Q |
266 |
actttaaatcttatccaagaaaaataaaattattatccttggatataaggtgcttcgacatgctctc |
332 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
8672310 |
acttaaaatcttatccaagaaaaataaaattattagccttggatataaggtgtttcgacattctctc |
8672244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 166 - 332
Target Start/End: Complemental strand, 10495711 - 10495546
Alignment:
| Q |
166 |
gtaacatgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcaatttcaaaagcaagacatc |
265 |
Q |
| |
|
|||| |||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| || |
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| T |
10495711 |
gtaatatgttaaacacaaatattatcataaacttcaatactattagataatgataataaaaacaaag-tctgcattcagcactttcaaaagcaagacttc |
10495613 |
T |
|
| Q |
266 |
actttaaatcttatccaagaaaaataaaattattatccttggatataaggtgcttcgacatgctctc |
332 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
10495612 |
actttaaatcttatcaaagaaaaataaaattattagtcttggatataaggtgtttcgacatgctctc |
10495546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 171 - 332
Target Start/End: Complemental strand, 13334701 - 13334540
Alignment:
| Q |
171 |
atgtgaaacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtctgcattcagcaatttcaaaagcaagacatcacttt |
270 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |
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| T |
13334701 |
atgttaaacagaaacattatcataaacttcaatgctattagataatgataataaaactaaaagtttgcattcagcactttcaaaagcaagacatcacttc |
13334602 |
T |
|
| Q |
271 |
aaatcttatccaagaaaaataaaattattatccttggatataaggtgcttcgacatgctctc |
332 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| ||||| ||||| |||||||||||||| |
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|
| T |
13334601 |
aaatcttatcacagaaaaataaaattattagtctttgatatcaggtgtttcgacatgctctc |
13334540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 8666097 - 8666190
Alignment:
| Q |
37 |
caaagattatttactcaacactagaataaagtctgagaaggatcagatcctaaagt--aagctttgaaggatgctgctaaaactagaatagagt |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8666097 |
caaagattatttactcaaaactagaatagtgtctgagaaggatcagatcctaaagtaaaagctttgaaggatgctgctaaaactagaatagagt |
8666190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 10511391 - 10511343
Alignment:
| Q |
66 |
agtctgagaaggatcag-atcctaaagtaagctttgaaggatgctgcta |
113 |
Q |
| |
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||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
10511391 |
agtctgagaaggatcaggatcctaaagcaagctttgaaggatgctgcta |
10511343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 332
Target Start/End: Complemental strand, 29214922 - 29214766
Alignment:
| Q |
177 |
aacacaaacattaacataaacttcaatgctattagataatgataataaaactaaaggtct-gcattcagcaatttcaaaagcaagacatcactttaaatc |
275 |
Q |
| |
|
||||||||||||| ||||| |||| |||||| |||| ||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
29214922 |
aacacaaacattatcataaccttcgatgctactagacaatgataataaaattaaaggttttgcattcagcaatttcaaaagcaaggcatcactttaaatc |
29214823 |
T |
|
| Q |
276 |
ttatccaagaaaaataaaattattatccttggatataaggtgcttcgacatgctctc |
332 |
Q |
| |
|
||| | ||| ||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
29214822 |
ttaacaaaggaaaataaaattattagtcttggatataaggtgtttcgacatgctctc |
29214766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 29464761 - 29464812
Alignment:
| Q |
167 |
taacatgtgaaacacaaacattaacataaacttcaatgctattagataatga |
218 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||||||||||||||||| |
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| T |
29464761 |
taacatgttcaacacatacattgccataaacttcaatgctattagataatga |
29464812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 33236319 - 33236382
Alignment:
| Q |
66 |
agtctgagaaggatcag-atcctaaagtaagctttgaaggatgctgctaaaactagaatagagt |
128 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
33236319 |
agtctgagaaggatcaggatcctaaagcaagctttgaaggatgctgctaaaactagaaaagagt |
33236382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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