View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15174_high_2 (Length: 398)
Name: NF15174_high_2
Description: NF15174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15174_high_2 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 11861203 - 11860816
Alignment:
| Q |
11 |
catcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccga |
110 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11861203 |
catcatcaagaccgggatatagtggcatggaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatcattttcccg |
11861104 |
T |
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| Q |
111 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaannnnnnngtattatcttgattgttcttt |
210 |
Q |
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| T |
11861103 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgcaagttccttcaaggatggaaagaattttggtgtattagtgtgattgttctct |
11861004 |
T |
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| Q |
211 |
gcaatgaatttcaaagagtccaatctacgaagttggagacccttgagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttca |
310 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11861003 |
gcaatgaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttca |
11860904 |
T |
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| Q |
311 |
aggtaaacttaacaaggaattgaagtgaagtgagccaattagacaacatgtggccatggtgcccgacgactaatagcactttcagatt |
398 |
Q |
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| T |
11860903 |
aggtaaatttaccaaggaattgaagtgaagcgagccaattagacaacatgtggccatggtacccgacaactaatagctctttcagatt |
11860816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 11829071 - 11828684
Alignment:
| Q |
11 |
catcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccga |
110 |
Q |
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||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | |
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| T |
11829071 |
catcatcaagaccgggatagagcagcatgcaagctaattgaggacagtattggatatttagctttgaaatgcaactgaaagatggtctatcattgtccca |
11828972 |
T |
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| Q |
111 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaannnnnnngtattatcttgattgttcttt |
210 |
Q |
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|||||| ||||||||||||| |||||| ||| |||||||||||||||| |||||||||||| |||||||||| |||| | |||||||||||||| |
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| T |
11828971 |
tatgtcattttcccaccaaccttttagtttaagacaatctgagattgttagttccttcaaggatggaaagaatataggtgtatcagcttgattgttcttt |
11828872 |
T |
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| Q |
211 |
gcaatgaatttcaaagagtccaatctacgaagttggagacccttgagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttca |
310 |
Q |
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||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||| |||| |
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| T |
11828871 |
gcaataaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctcatccattggtgggagaaattcgcatttgggacagtcattca |
11828772 |
T |
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| Q |
311 |
aggtaaacttaacaaggaattgaagtgaagtgagccaattagacaacatgtggccatggtgcccgacgactaatagcactttcagatt |
398 |
Q |
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||||||||||||||||| |||||||||||| |||||| |||||||| |||| || | || |||||| ||||||||||||| |||||| |
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| T |
11828771 |
aggtaaacttaacaaggcattgaagtgaagcgagccagttagacaatgtgtgaccgttgtacccgacaactaatagcacttgcagatt |
11828684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 11901309 - 11901477
Alignment:
| Q |
11 |
catcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccga |
110 |
Q |
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||||||||||||| |||||||| |||||||||||||| | ||||||| ||||||| ||||| |||||||||||||||||| |||||||||| || || | |
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| T |
11901309 |
catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca |
11901408 |
T |
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| Q |
111 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaa |
179 |
Q |
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|| || ||||||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||| |
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| T |
11901409 |
aatctcattttcccaccaacttttcagattaggacaatccgaaattgtaagttccttcaaggatggaaa |
11901477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 12039992 - 12039824
Alignment:
| Q |
11 |
catcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccga |
110 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||| || |||||||||| |||||| || |||||||||||||||||||||||||| || ||| | |
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| T |
12039992 |
catcatcaagattaggatatagtggcatgcaagctaacttggggcaatattggacatttagtttggaaatgcaactgaaagatggtctatcattatccca |
12039893 |
T |
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| Q |
111 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaa |
179 |
Q |
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||| || ||||||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
12039892 |
tatctcagtttcccaccaactgtttagatttggacaatccgagattgtaagttccttcaaggatggaaa |
12039824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 197 - 326
Target Start/End: Original strand, 11901516 - 11901645
Alignment:
| Q |
197 |
cttgattgttctttgcaatgaatttcaaagagtccaatctacgaagttggagacccttgagacgtggaagctgatccattggtgggagaaatttgcaatt |
296 |
Q |
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|||||||||| | |||||||||||||| |||||||| ||| |||| ||||||| |||||||| ||||||||||||||||||| |||||||| | ||| || |
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| T |
11901516 |
cttgattgttttctgcaatgaatttcagagagtccagtctccgaatttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcattt |
11901615 |
T |
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| Q |
297 |
gggacagtcgttcaaggtaaacttaacaag |
326 |
Q |
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| T |
11901616 |
gggacagtcgttcaaggtaaacttaacaag |
11901645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 197 - 339
Target Start/End: Complemental strand, 12039785 - 12039643
Alignment:
| Q |
197 |
cttgattgttctttgcaatgaatttcaaagagtccaatctacgaagttggagacccttgagacgtggaagctgatccattggtgggagaaatttgcaatt |
296 |
Q |
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|||||||||| |||||||||||||||| |||||||| || |||||||||||| |||||||| ||||||||| ||||||||| |||||||||| ||| || |
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| T |
12039785 |
cttgattgttttttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattt |
12039686 |
T |
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| Q |
297 |
gggacagtcgttcaaggtaaacttaacaaggaattgaagtgaa |
339 |
Q |
| |
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|| ||||| |||||||||||||||||||| | ||||||||| |
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| T |
12039685 |
tgggcagtcattcaaggtaaacttaacaagacaatgaagtgaa |
12039643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 353
Target Start/End: Complemental strand, 11732676 - 11732533
Alignment:
| Q |
210 |
tgcaatgaatttcaaagagtccaatctacgaagttggagacccttgagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttc |
309 |
Q |
| |
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||||||||||| | ||| ||||| || ||||| |||||| |||||||| |||||| ||||| ||||| || ||||||||||| || |||||||| || |
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| T |
11732676 |
tgcaatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtgatcgattggcggtagaaatttgcatttaggacagtcactc |
11732577 |
T |
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| Q |
310 |
aaggtaaacttaacaaggaattgaagtgaagtgagccaattaga |
353 |
Q |
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| T |
11732576 |
aaggtaaacttaacaaggcattgaagcgaatcgagccatttaga |
11732533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 11732876 - 11732725
Alignment:
| Q |
34 |
ggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccgatatgt---ctttttcccaccaac |
130 |
Q |
| |
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|||| ||| ||||| | ||||||| || |||||||||| |||||||||||| |||||||||||| | ||||| | || | | | ||||||||||||| |
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| T |
11732876 |
ggcacgcatgctaatttaggacaacatcggatatttagttttgaaatgcaagggaaagatggtctgttttttttcaatgtcttatcattttcccaccaac |
11732777 |
T |
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| Q |
131 |
tttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaa |
182 |
Q |
| |
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||| || ||||||||||| || |||||||| ||||||||| ||||||||| |
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| T |
11732776 |
tttcgagtttaggacaatccgaaattgtaagctccttcaaggctggaaagaa |
11732725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 11973736 - 11973793
Alignment:
| Q |
123 |
ccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaag |
180 |
Q |
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|||||| || || ||||||||||||||||||||||| ||||||| ||| |||||||| |
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| T |
11973736 |
ccaccacctcttgagattaggacaatctgagattgtgagttcctccaaagatggaaag |
11973793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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