View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15174_low_4 (Length: 333)
Name: NF15174_low_4
Description: NF15174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15174_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 5047452 - 5047758
Alignment:
| Q |
16 |
atcgtattcgaagtttgaattttgaatcctccatctatac--gtgggagtttcaatggtatttattatttcatccatctaaaaatttaaaaatatatcag |
113 |
Q |
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| T |
5047452 |
atcgtattcgaagtttgaattttgaatcctccatctatacacgtgtgagtttcaatggtatttattatttcatccatctaaaaatttaaaaatatatcag |
5047551 |
T |
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| Q |
114 |
cacaatttgaaactttgatgtttnnnnnnnnnnctgatggaatatagtatatttttnnnnnnntattggctccttaataaatatatgtacttttaactta |
213 |
Q |
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| T |
5047552 |
cacaatttgaaactttgatgtt-aaaaaaaaaactgatcgaatatagtatattttcaaaaaaatattggctccttaataaatatatctacttttaactta |
5047650 |
T |
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| Q |
214 |
act-----atagtggtgtagttcaattctcaagtcaccgacttcattgctcaaacaaggtacagaaactttagatctcatttcctttattggttttcaat |
308 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5047651 |
actgttacatagtggtgtagttcaattctcaagtcaccgacttcattgctcaaacaaggtacagaaactttagatctcatttcctttattggttttcaat |
5047750 |
T |
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| Q |
309 |
atagatct |
316 |
Q |
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|||||||| |
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| T |
5047751 |
atagatct |
5047758 |
T |
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