View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15174_low_6 (Length: 284)
Name: NF15174_low_6
Description: NF15174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15174_low_6 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 142 - 283
Target Start/End: Original strand, 50872707 - 50872848
Alignment:
| Q |
142 |
atgtatagagagagtgaagaaagaaacttactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaac |
241 |
Q |
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| T |
50872707 |
atgtatagagagagtgaagaaagaaacttactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaac |
50872806 |
T |
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| Q |
242 |
gagggacttttgatcttatatactgcctctctgctcctcctc |
283 |
Q |
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| T |
50872807 |
gagggacttttgatcttatatactgcctcactgctcctcctc |
50872848 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 50872604 - 50872640
Alignment:
| Q |
47 |
acaagtttaggagtagcctctgccaaaaatacaaagt |
83 |
Q |
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| T |
50872604 |
acaagtttaggagtagcctctgccaaaaatacaaagt |
50872640 |
T |
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Target: scaffold0223 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 21326 - 21415
Alignment:
| Q |
170 |
tactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaacgagggacttttgatctta |
259 |
Q |
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| T |
21326 |
tactttgatgaccaccaagagtttcaatggcataaacaaagcaacgatgaagttcaggtgtccatcttaaacgaggaacctttgatctta |
21415 |
T |
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