View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_11 (Length: 465)
Name: NF15175_high_11
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 4 - 450
Target Start/End: Original strand, 41281016 - 41281446
Alignment:
| Q |
4 |
aaataggtccataaagcgttgcacctgctactatggtgcacgctaaggcggttctaaatgctgaagagaggcactttctccatcatggtgggatgttgaa |
103 |
Q |
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| T |
41281016 |
aaataggtccataaagtgttgcaccagctactatggtgcaagctaaggcggttctaaatgctgaagagagacactctctccacaatggtggaatgttgaa |
41281115 |
T |
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| Q |
104 |
gaaactcaccataaggtttagtggtgatttctccattttggttttgttattttttgggattgggctagcttagggctgaggagtactcttgcatgctctt |
203 |
Q |
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| T |
41281116 |
gaaactcaccataaggtttagtggtgatctctccattttggttttaatattttttgggtttttgctagct-------gaggagtactcttgcatgctctt |
41281208 |
T |
|
| Q |
204 |
tggtttatataatgagattatataagag-aatagagcatgtgataacttgataagtggtaaataatttcaatttggggtttatttatttatttatatatt |
302 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41281209 |
tggtttatataatgagattatataagaggaatagagcatgtgataacttgataagtggtaaataatttcaatttgggatttatttatttatttatatatt |
41281308 |
T |
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| Q |
303 |
taggtgataatggatgtgatgtgatgtgatgtgatgtataaattaggtctgagtacttcgttgggtactctcctctaagtatctgaataatattttgttg |
402 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41281309 |
taggtgataatg----------gatgtgatgtgatgtataaattaggtctgagtacttcattgggtactctcctctaagtatctgaataatattttgttg |
41281398 |
T |
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| Q |
403 |
attnnnnnnntagataatggaagtgatgtatgcgtaggaccatatata |
450 |
Q |
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| T |
41281399 |
attaaaaaaatagataatggaagtgatgtatgcgtaggaccatatata |
41281446 |
T |
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