View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_12 (Length: 429)
Name: NF15175_high_12
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 45305797 - 45306182
Alignment:
| Q |
1 |
agagaatggtataatattgttggatgaatatgggacaaaagatagagatgaggttgactaggctttaagnnnnnnnnnnnnnnagcgtggaattctggga |
100 |
Q |
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| T |
45305797 |
agagaatggtataatattgttggatgaatatgggacaaaagat-gagatgaggttgactaggctttaaggagggagagagagaagcgtggaattctggga |
45305895 |
T |
|
| Q |
101 |
gattgatttgttattgggagtagagaatgaaaaacgacgtgacgatgatgagggttatcatgagcctcatcactcatttattgttctcttttacgtctcg |
200 |
Q |
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| T |
45305896 |
gattgatttgttattgggagtagagaatgaaaaacgacgtgacgatgatgagggttatcatgagcctcatcactcatttattgttctcttttacgtctcg |
45305995 |
T |
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| Q |
201 |
tgcctttcacactaattctcaatccgaactgctccctctttcacccttttctttgtctattttgctgtccaatctccatgcatgtacggttcaactcgaa |
300 |
Q |
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| T |
45305996 |
tgcctttcacactaattctcaatccgaactgctccctctttcacccttttctttgtctattttgctgtccaatctccttgcatgtacggttcaagtcgaa |
45306095 |
T |
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| Q |
301 |
tacttctttcttttttcacctctacgatccgataataccatataa-gtatcttctttctcaataaaatacatacatacagtattatat |
387 |
Q |
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| T |
45306096 |
tacttc-ttcttttttcacctctacgatctgataataccatataatgtatcttctttctcaataaaatacatacatacagtattatat |
45306182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 45306221 - 45306256
Alignment:
| Q |
383 |
tatatgaacaaagaaaataattaaataatatatatt |
418 |
Q |
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| T |
45306221 |
tatatgaacaaagaaaataattaaataatatatatt |
45306256 |
T |
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