View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15175_high_18 (Length: 322)
Name: NF15175_high_18
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 43811872 - 43811569
Alignment:
| Q |
13 |
aatattaataggaaataaaatatcatatcaaacaaacataccaagtaaaaatttaaagctttcatatgtattaatcaaactctccctctcattctttgcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43811872 |
aatattaataggaaataaaatatcatatcaaacaaacatagcaagtaaaaatttaaagctttcatctgtattaatcaaactctccctctcattctttgcc |
43811773 |
T |
|
| Q |
113 |
tttacattattatcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatcttaatttgaatttcc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43811772 |
tttacattattatcacaacattcatataattttgacaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatcttaatttgaatttcc |
43811673 |
T |
|
| Q |
213 |
aaacgagtattagacaaatatttgatagcaagctaaattttccatctttttgtagattccgaaaagaattaatataagtgttgaataactccaaagaatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43811672 |
aaacgagtattagacaaatatttgatagcaagctaaattttccatctttttgtagattccgaaaagaattaatataagtgttgaataactccaaagaatg |
43811573 |
T |
|
| Q |
313 |
aaat |
316 |
Q |
| |
|
|||| |
|
|
| T |
43811572 |
aaat |
43811569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 12381914 - 12381697
Alignment:
| Q |
17 |
ttaataggaaataaaatatcatatcaaacaaacataccaagtaaaaatttaaagctttcatatgtattaatcaaactctccctctcattctttgccttta |
116 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| || |||||| ||||||| ||| |||| || |||||||||||||||| |||| |||||| |||| |
|
|
| T |
12381914 |
ttaatagcaaataaaatatcataccaaacaaccacaccaagcaaaaattcaaaattttctagtgcattaatcaaactctccgcctcactctttgtctttg |
12381815 |
T |
|
| Q |
117 |
cattattatcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatcttaatttgaatttccaaac |
216 |
Q |
| |
|
||| |||||||||| |||||||||||| | ||||| |||||||||| ||||||| |||||||||| |||| || | |||||||| || ||||| ||| |
|
|
| T |
12381814 |
catcattatcacaagattcatataattcagacaaagccaatcttatttggggacattgaaatctaatggctttgac-actcttaattcgactttcccaac |
12381716 |
T |
|
| Q |
217 |
gagtattagacaaatattt |
235 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
12381715 |
gagtattagacaaatattt |
12381697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 39534544 - 39534656
Alignment:
| Q |
81 |
tattaatcaaactctccctctcattctttgcctttacattattatcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatct |
180 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||| | ||||| ||||||||| ||||| | |||||| |
|
|
| T |
39534544 |
tattaatcaaactctccacaccactctttgtatttacatcattatcacaacattcatataattctaacaaagccgatcttatttggggacaatgaaatct |
39534643 |
T |
|
| Q |
181 |
aatgactttaaca |
193 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
39534644 |
aataactttaaca |
39534656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 12381673 - 12381598
Alignment:
| Q |
241 |
caagctaaattttccatctttttgtagattccgaaaagaattaatataagtgttgaataactccaaagaatgaaat |
316 |
Q |
| |
|
||||| ||||||||||||| ||||||||| | ||||| | | |||||||| | ||||||||||||||||| ||||| |
|
|
| T |
12381673 |
caagcaaaattttccatctctttgtagatccagaaaacactgaatataagcgatgaataactccaaagaaagaaat |
12381598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 32176943 - 32177152
Alignment:
| Q |
25 |
aaataaaatatcatatcaaacaaacataccaagtaaaaatttaaagctttcatatgtattaatcaaactctccctctcattctttgcctttacattatta |
124 |
Q |
| |
|
||||||||||||||| ||||||| || |||||| ||||||| ||| |||| || |||||||||||||||| |||| |||||| |||| ||| |||| |
|
|
| T |
32176943 |
aaataaaatatcataccaaacaaccacaccaagcaaaaattcaaaattttctagtgcattaatcaaactctccgcctcactctttgtctttgcatcatta |
32177042 |
T |
|
| Q |
125 |
tcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatcttaatttgaatttccaaacgagtatta |
224 |
Q |
| |
|
|||||| |||||||||||| || ||||| |||||||||| ||||||| |||||||||| |||| || | |||||||| || ||||| ||||||||||| |
|
|
| T |
32177043 |
tcacaagattcatataattctgacaaagccaatcttatttggggacattgaaatctaatggctttgac-actcttaattcgactttcccaacgagtatta |
32177141 |
T |
|
| Q |
225 |
gacaaatattt |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
32177142 |
gacaaatattt |
32177152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 9959258 - 9959049
Alignment:
| Q |
25 |
aaataaaatatcatatcaaacaaacataccaagtaaaaatttaaagctttcatatgtattaatcaaactctccctctcattctttgcctttacattatta |
124 |
Q |
| |
|
||||||||||||||| ||||||| || |||||| ||||||| ||| |||| || |||||||||||||||| |||| |||||| |||| ||| |||| |
|
|
| T |
9959258 |
aaataaaatatcataccaaacaaccacaccaagcaaaaattcaaaattttctagtgcattaatcaaactctccgcctcactctttgtctttgcatcatta |
9959159 |
T |
|
| Q |
125 |
tcacaacattcatataattttggcaaagttaatcttatttaaggacattaaaatctaatgactttaacaaatcttaatttgaatttccaaacgagtatta |
224 |
Q |
| |
|
|||||| |||||||||||| | ||||| |||||||||| ||||||| |||||||||| |||| || | |||||||| || ||||| ||||| ||||| |
|
|
| T |
9959158 |
tcacaagattcatataattccgacaaagccaatcttatttggggacattgaaatctaatggctttgac-actcttaattcgactttcccaacgaatatta |
9959060 |
T |
|
| Q |
225 |
gacaaatattt |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
9959059 |
gacaaatattt |
9959049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 9959025 - 9958950
Alignment:
| Q |
241 |
caagctaaattttccatctttttgtagattccgaaaagaattaatataagtgttgaataactccaaagaatgaaat |
316 |
Q |
| |
|
||||| ||||||||||||| ||||||||| ||||||| | | |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
9959025 |
caagcaaaattttccatctctttgtagatcccgaaaacactgaatataagcgttgaataactccaaagaaagaaat |
9958950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 42157966 - 42158039
Alignment:
| Q |
121 |
attatcacaacattcatataattttggcaaagttaatctt-atttaaggacattaaaatctaatgactttaaca |
193 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||| ||||||| | ||| |||||||||| |||||||| |
|
|
| T |
42157966 |
attatcacaacattcatataatttcgataaagtcaatcttcatttaagaatattgaaatctaatggctttaaca |
42158039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University