View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_22 (Length: 295)
Name: NF15175_high_22
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 29688048 - 29688310
Alignment:
| Q |
15 |
cacagacaaataccctttactactgttattgattccaatttagaagcaaagtatttctatggttttgggtatgatgagtctactgatgattacctggttc |
114 |
Q |
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| T |
29688048 |
cacagacaaataccctttactactgttattgattccaatttagaagcaaagtatttctatggttttgggtatgatgagtctactgatgattacctggttc |
29688147 |
T |
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| Q |
115 |
tttcaatgtgctatgatccaagtgcacgtggtttgttatctcacttggggcttttctcattaagagctaatacgtggaaggaaatggagggtggtgacaa |
214 |
Q |
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| T |
29688148 |
tttcaatgtgctatgatccgagtgcacgtggtttgttatctcacttggggcttttctcattaagagctaatacgtggaaggaaatggagggtggtgacaa |
29688247 |
T |
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| Q |
215 |
tttgcgttattcacagcagtgtatgtattctagagtagattcactcctaaatggggttattca |
277 |
Q |
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| T |
29688248 |
tttgcgttattcacagcagtgtatgtattctagagtagattcactcctaaatggggttattca |
29688310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 29696173 - 29696261
Alignment:
| Q |
42 |
attgattccaatttagaagcaaagtatttctatggttttgggtatgatgagtctactgatgattacctggttctttcaatgtgctatga |
130 |
Q |
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| T |
29696173 |
attgattccaatccagatgcaaattatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga |
29696261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 29712582 - 29712415
Alignment:
| Q |
40 |
ttattgattccaatttagaagcaaagtatttctatggttttgggtatgatgagtctactgatgattacctggttctttcaatgtgctatgatccaagtgc |
139 |
Q |
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| T |
29712582 |
ttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgc |
29712483 |
T |
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| Q |
140 |
acgtggtttgttatctcacttggggcttttctcattaagagctaatacgtggaaggaaatggagggtg |
207 |
Q |
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| T |
29712482 |
ttatgataagttaactcgcttagggcttttctcattgagagctgatgcgtggaacgaaattgagggtg |
29712415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 179025 - 179066
Alignment:
| Q |
66 |
tatttctatggttttgggtatgatgagtctactgatgattac |
107 |
Q |
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| T |
179025 |
tatttctatggttttgggtatgaggagtcaacagatgattac |
179066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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