View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_26 (Length: 268)
Name: NF15175_high_26
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_26 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 4301335 - 4301081
Alignment:
| Q |
17 |
tcagctgaacctttctttccttcactactatatccattgtgcatttgggatgcttccacgggagacgaactagattgaacctcgcttagagctccattaa |
116 |
Q |
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| T |
4301335 |
tcagctgaacctttctttccttcactactatatccattgtgcatttgggatgcttccacgggagacgaactagattgaacctcgcttagagctccattaa |
4301236 |
T |
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| Q |
117 |
cagaacttg---atgaaacttctgcaataggagtttttgctggcatgctgtcctggtttcgttctactagatctacataaacttcattattggcatactt |
213 |
Q |
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| T |
4301235 |
cagaacttgttgatgaaacttctgcaataggagtttttgctggcatgctgtcctggtttcgttctacaagatctacataaacttcattattggcatactt |
4301136 |
T |
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| Q |
214 |
agggtcggttgctctacagggaacaatatttggtggagatatcagctcttgtagc |
268 |
Q |
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| T |
4301135 |
agggtcggttgctctacagggaacaatatttggtggagatatcagctcttgtagc |
4301081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 19704594 - 19704447
Alignment:
| Q |
34 |
tccttcactactatatccattgtgcatttgggatgcttccacgggagacgaactagattgaacctcgcttagagctccattaacagaac---ttgatgaa |
130 |
Q |
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| T |
19704594 |
tccttcactactatatccatcgtgcatttgggatgcttccactggagacgaactagattgaacctcacttagagctccgttaacagaacctgttgatgaa |
19704495 |
T |
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| Q |
131 |
acttctgcaataggagtttttgctggcatgctgtcctggtttcgttct |
178 |
Q |
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| T |
19704494 |
acttctgcaataggagcttttgctggcattctgtcctggttttgttct |
19704447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 8915887 - 8915943
Alignment:
| Q |
182 |
agatctacataaacttcattattggcatacttagggtcggttgctctacagggaaca |
238 |
Q |
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| T |
8915887 |
agatctacataaacttcattattggcatacttatggtcgactgttctccagggaaca |
8915943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 45962728 - 45962664
Alignment:
| Q |
174 |
gttctactagatctacataaacttcattattggcatacttagggtcggttgctctacagggaaca |
238 |
Q |
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| T |
45962728 |
gttctacaagatctacataaacttcattattggcatactttggatcagctgttctccagggaaca |
45962664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 7634659 - 7634621
Alignment:
| Q |
182 |
agatctacataaacttcattattggcatacttagggtcg |
220 |
Q |
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| T |
7634659 |
agatctacataaacttcattattggcatacttagggtcg |
7634621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 23571428 - 23571386
Alignment:
| Q |
174 |
gttctactagatctacataaacttcattattggcatacttagg |
216 |
Q |
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| T |
23571428 |
gttcaactagatctacacaaacttcattattggcatacatagg |
23571386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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