View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_27 (Length: 267)
Name: NF15175_high_27
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 7132237 - 7132351
Alignment:
| Q |
17 |
atttttgattcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatgaaagctatatact |
116 |
Q |
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| T |
7132237 |
atttttgattcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatgaaagctatatact |
7132336 |
T |
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| Q |
117 |
tttaagttacgaaaa |
131 |
Q |
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| T |
7132337 |
tttaagttacgaaaa |
7132351 |
T |
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Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 7132359 - 7132444
Alignment:
| Q |
177 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgctact |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7132359 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgttact |
7132444 |
T |
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