View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15175_high_28 (Length: 264)
Name: NF15175_high_28
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 7544865 - 7545128
Alignment:
| Q |
1 |
cctatccttttacatacaagcattggactttctatgccaacctcttgctaaaacaataaattcagaaaggaaacagttagtaaccggaaaggacgatgct |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7544865 |
cctatcctcttacatacaagcattggactttctatgccaaccgcttgctaaaacaataaattcagaaaggaaacagttagtaactggaaaggacgatgct |
7544964 |
T |
|
| Q |
101 |
tttgctatgactatgctttcaattgttaaagacgtatttcatgcgttttgccagtttattcttcatagtccgaggtatattcagtgaatatctaaattat |
200 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7544965 |
tctgctatgactatgctttcaattgttgaagacgtatttcatgcgttttgccaatttactcttcatagtccgaggtatattcagtgaatatctaaattat |
7545064 |
T |
|
| Q |
201 |
tttggtcaagtaga--ttttattcatatttgacctaattgtctttctatatattcttggacatc |
262 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||||||||||||||||||| || ||| ||||| |
|
|
| T |
7545065 |
tttggtcaagtagatttttttttcatatttggcctaattgtctttctatattttattgtacatc |
7545128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1126809 - 1127054
Alignment:
| Q |
1 |
cctatccttttacatacaagcattggactttctatgccaacctcttgctaaaacaataaattcagaaaggaaacagttagtaaccggaaaggacgatgct |
100 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| |||||||||| ||||||| |||||||||||||||||||| | || ||||| |||||||| |||||| |
|
|
| T |
1126809 |
cctatcattttacacagaagcattggactttatatgccaaccacttgctagttcaataaattcagaaaggaaagaatttgtaactggaaaggatgatgct |
1126908 |
T |
|
| Q |
101 |
tttgctatgactatgctttcaattgttaaagacgtatttcatgcgttttgccagtttattcttcatagtccgaggtatattcagtgaatatctaaattat |
200 |
Q |
| |
|
| |||| ||||| ||||||| | |||| ||| | ||||||||| |||| || ||| ||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
1126909 |
tctgctttgactgtgctttccactgttggagatgcatttcatgctctttgtcaatttgttctttatgatccaaggtatattcagtgaatatctaaattat |
1127008 |
T |
|
| Q |
201 |
tttggtcaagtagattttattcatatttgacctaattgtctttctat |
247 |
Q |
| |
|
|||||| ||||||| ||| || || |||| |||| ||||||||||| |
|
|
| T |
1127009 |
tttggtgaagtagagttt-ttaatgtttggcctatatgtctttctat |
1127054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University