View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_3 (Length: 601)
Name: NF15175_high_3
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 20 - 590
Target Start/End: Original strand, 2018501 - 2019071
Alignment:
| Q |
20 |
ccttctgtcaaagagatggaaaccactctggctctccctccgttccttcgaccttgatgacaactacttttccgacttccacaggttttccaatttcttc |
119 |
Q |
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| T |
2018501 |
ccttctgtcaaagagatggaaaccactctggctctccttccgttccttcgaccttgatgacaactacttttccgacttccacaggttttccaatttcgtc |
2018600 |
T |
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| Q |
120 |
acctcatcaccacaatccattcaatccttacgcctcacttgtggctcccattttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcc |
219 |
Q |
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| T |
2018601 |
acctcatcaccacaatccattcaatccttacgcctcacttgtggctcccattttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcc |
2018700 |
T |
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| Q |
220 |
tttatagactgtcgttcaaaggaattcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacacttgcaataatcttgtcac |
319 |
Q |
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| T |
2018701 |
tttatagactgtcgttcaaaggaattcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacacttgcaataatcttgtcac |
2018800 |
T |
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| Q |
320 |
acttaagctagaaaatgttactttcaaagatggctcttcctatatcaattttccattactcaaatccctaaatttgaacgacgtcgtctttggaaaccgt |
419 |
Q |
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| T |
2018801 |
acttaagctagacaatgttactttcaaagatggctcttcctatatcaattttccattactcaaatcccttaatttgaacgacgtcgtctttggaaatcgt |
2018900 |
T |
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| Q |
420 |
gctaacatgttggacnnnnnnngcggatgtcccaatgttgaagatgtagaagtgacttcactatcaatagttaatagtcgcattcctcagccaccagaag |
519 |
Q |
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| T |
2018901 |
gctaacatgtttgactttttttgcggatgtcccaatgttgaagatgtagaagtgacatcactatcaatagttaatagtcgcattcctcagccaccagaag |
2019000 |
T |
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| Q |
520 |
agggggttgaagccttaccaaagttggtcagagcaaaaatttcagaattatatagcatgttacctttgctt |
590 |
Q |
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| T |
2019001 |
agggggttgaagccttaccaaagttggtcagagcaaaaatttcagaattacatagcatgttacctttgctt |
2019071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 2005650 - 2005700
Alignment:
| Q |
20 |
ccttctgtcaaagagatggaaaccactctggctctccctccgttccttcga |
70 |
Q |
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| T |
2005650 |
ccttctgtcaaagagatggaaaccactttggctctcactccgttccttcga |
2005700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 2011825 - 2011919
Alignment:
| Q |
21 |
cttctgtcaaagagatggaaaccactctggctctccctccgttccttcgaccttgatgacaactacttttccgacttccacaggttttccaattt |
115 |
Q |
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| T |
2011825 |
cttctatcaaagagatggaaaccactttggctctcgctccgttcctttgacttccatgacagatactttcctgacttcctcaagttttccgattt |
2011919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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