View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_35 (Length: 248)
Name: NF15175_high_35
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34941593 - 34941824
Alignment:
| Q |
1 |
tgttcatcctaattaaatgtccagtnnnnnnntctgattagcagtagcaagaaataacttaatagcaattaaattaagctatttgtaatgtttaaagctt |
100 |
Q |
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| T |
34941593 |
tgttcatcctaattaaatgtccagtaaaaaaatccgattagcagtagcaagaaataacttaatagcaattaaattaagctatt-gtaatgtttaaagctt |
34941691 |
T |
|
| Q |
101 |
caatttagtagcaagaaagcatgtttaattctagcatgtttaaagcttcaacttaa--tttttgttaaaggatttcctttttaccctggtagagaggatg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
34941692 |
caatttagtagcaagaaagcatgtttaattctagcatgtttaaagcttcaacttaatttttttgttaaaggatttccttcttaccctggtacagaggatg |
34941791 |
T |
|
| Q |
199 |
caataattattttggggtgcagaatatacgatt |
231 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34941792 |
caataattattttggggtgcagaatatacgatt |
34941824 |
T |
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