View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15175_high_42 (Length: 215)

Name: NF15175_high_42
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15175_high_42
NF15175_high_42
[»] chr3 (21 HSPs)
chr3 (1-215)||(46490895-46491109)
chr3 (1-195)||(46498134-46498334)
chr3 (1-183)||(46479976-46480164)
chr3 (1-183)||(46484234-46484414)
chr3 (1-188)||(46474115-46474302)
chr3 (6-183)||(45883487-45883667)
chr3 (6-190)||(5156436-5156629)
chr3 (6-183)||(46539188-46539371)
chr3 (6-77)||(16025675-16025746)
chr3 (6-79)||(5160465-5160538)
chr3 (1-76)||(4581246-4581321)
chr3 (127-189)||(5160595-5160657)
chr3 (12-167)||(46544669-46544830)
chr3 (13-76)||(4613703-4613766)
chr3 (6-180)||(46236545-46236728)
chr3 (111-189)||(46526167-46526245)
chr3 (12-110)||(51944087-51944185)
chr3 (127-172)||(46548765-46548810)
chr3 (135-183)||(4581139-4581187)
chr3 (135-183)||(4613596-4613644)
chr3 (30-77)||(47397171-47397218)
[»] chr8 (3 HSPs)
chr8 (12-181)||(21463943-21464118)
chr8 (6-192)||(9675438-9675630)
chr8 (6-183)||(9692469-9692652)
[»] chr4 (3 HSPs)
chr4 (6-77)||(15556203-15556274)
chr4 (19-192)||(35162642-35162821)
chr4 (135-192)||(35155744-35155801)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 46490895 - 46491109
Alignment:
Q  1 ggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46490895 ggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctgggcgtggttttacctttcaccaatggaggtcttactaaaat 46490994  T
Q  101 ggtgaactctagtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagccaccgtaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  46490995 ggtgaactctagtcaaaacctatgtatttctaaaatatttcacaagtcttttattgatgtaaatgaagaaggcaccgaagctgttgcagccaccgcaact 46491094  T
Q  201 gaagtaatgactagc 215  Q
    |||||| | ||||||    
T  46491095 gaagtattcactagc 46491109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 46498134 - 46498334
Alignment:
Q  1 ggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaat 100  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||| |||||||| ||||||||| | ||||||||    
T  46498134 ggattccaaggttcaatatttcatttgaacttgaaacttctgatatgttaaaggagcttggcgtggttttgcctttcactaatggaggtttgactaaaat 46498233  T
Q  101 ggtgaactct------agtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagccacc 194  Q
    ||||||||||      ||||||||||| | | |||| |||||||| ||||||||||| ||||| |||||||||||||||||| |||||| ||| ||||||    
T  46498234 ggtgaactctgctgtgagtcaaaacctttatgtttccaaaatattccacaagtctttcattgaagtaaatgaagaaggcaccaaagctgctgcggccacc 46498333  T
Q  195 g 195  Q
    |    
T  46498334 g 46498334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 46479976 - 46480164
Alignment:
Q  1 ggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaat 100  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |   ||||||||| || || ||    
T  46479976 ggattccaaagttcaatatttcatttggacttgaaacttctgatatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagat 46480075  T
Q  101 ggtgaactc------tagtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 183  Q
    |||||||||      |||||||||||| ||| |||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  46480076 ggtgaactcttcagttagtcaaaacctttgtgtttccaatatatttcacaagtctttcattgaagtaaatgaagaaggcactgaagctg 46480164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 46484234 - 46484414
Alignment:
Q  1 ggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaat 100  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |   ||||||||| || || ||    
T  46484234 ggattccaaagttcaatatttcatttggacttgaaacttctgttatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagat 46484333  T
Q  101 ggtgaactctagtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 183  Q
    ||||||||||| |||||| || ||  | || || ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||    
T  46484334 ggtgaactctaatcaaaaactttg--tgtccaatatattgcacaaatctttcattgaagtaaatgaagaaggcactgaagctg 46484414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 46474115 - 46474302
Alignment:
Q  1 ggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaat 100  Q
    |||| |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |   || ||| || || |||||    
T  46474115 ggattccaaagttcaatatttcatttggacttgaaacttccgatatgctaaaggagctaggtgtggttttacctttctctggtgaagggctgacaaaaat 46474214  T
Q  101 ggtgaactctagtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgca 188  Q
    |||| |||||| |||||| || | ||| || || ||||| ||||| | ||| ||||| ||||||||||||||||| ||||||| ||||    
T  46474215 ggtggactctaatcaaaaactttttatgtccaatatattgcacaaatatttcattgaagtaaatgaagaaggcactgaagctgctgca 46474302  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 45883667 - 45883487
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtga 105  Q
    ||||| |||||| |||||||||| |||||||||||| ||||| |||||||| |||| ||||||| ||||||| |   |||| || | || |||||||||     
T  45883667 ccaagattcaatgtttcatttgggcttgaaacttctaatatgttgaaggagttaggagtggtttcacctttctctcgtggaagtttgacaaaaatggtgg 45883568  T
Q  106 act---ctagtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 183  Q
    |||   | | |||| |||| | ||||||| | || |||||| ||||||| ||||| || |||||||||||||| |||||||    
T  45883567 actatccaaatcaagacctttatatttctcacatttttcactagtctttcattgaagttaatgaagaaggcactgaagctg 45883487  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 5156436 - 5156629
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtga 105  Q
    ||||| ||||| ||||||||||  ||||||||||| |||||| | || |||||||| ||| |||||||||||||   ||||||| | || |||||||||     
T  5156436 ccaagattcaaaatttcatttgagcttgaaacttccgatatgttcaaagagctaggagtgattttacctttcactcgtggaggtttgacaaaaatggtgg 5156535  T
Q  106 actctagtc---------aaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagc 190  Q
    |||||  ||         | | ||| | | ||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| ||||||    
T  5156536 actctcctcttgtgggcaatagcctttctgtttctaaaatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagctgctgcagc 5156629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 46539188 - 46539371
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtga 105  Q
    ||||| ||||| ||||| ||||  |||||||||||| ||||||| |||||||||||  |||||||||||||| |  | |||||| | || |||||||||     
T  46539188 ccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctctcaaggaggtttgacaaaaatggtgg 46539287  T
Q  106 actct------agtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 183  Q
    |||||      ||||||||||| | | ||||  |  |||| ||||||||||||||||| ||||||||| |||| ||| ||||||    
T  46539288 actctcctacaagtcaaaacctttatgtttccgatgtattccacaagtcttttattgaagtaaatgaacaaggaaccaaagctg 46539371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 16025675 - 16025746
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttc 77  Q
    |||||||||||  ||||||||||  |||||||||||||||||||||||||||| || || ||||||||||||    
T  16025675 ccaaggttcaaggtttcatttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttc 16025746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 5160465 - 5160538
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcac 79  Q
    ||||| ||||| ||||||||||  ||||||||||||||||||||||||||| |||| |||  ||||||||||||    
T  5160465 ccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttacctttcac 5160538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4581321 - 4581246
Alignment:
Q  1 ggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttaccttt 76  Q
    |||| ||||| ||||||||||| |||| ||||||||| |||  | |||||||||||||||| ||||||||||||||    
T  4581321 ggattccaagattcaatatttcttttgaacttgaaacgtctagtgtgctgaaggagctaggagtggttttaccttt 4581246  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 5160595 - 5160657
Alignment:
Q  127 tttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcag 189  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||  | |||||||||||||    
T  5160595 tttctaaaatatttcacaaatctttcattgaagtaaatgaagaaggtgctgaagctgttgcag 5160657  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 46544669 - 46544830
Alignment:
Q  12 ttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtgaactct- 110  Q
    ||||||||| | ||||| |||||||||||||   |||||||||||||||| ||||||||||||||| | |  |||||| | || || |||||| |||||     
T  46544669 ttcaatattgcttttgggcttgaaacttctggcgtgctgaaggagctaggagtggttttacctttctctacaggaggtttgacaaatatggtggactctc 46544768  T
Q  111 -----agtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaa 167  Q
           |||||||||   |||||| || ||||| ||||||||||||||||| |||||||||    
T  46544769 ctatggatcaaaaccttcatatttccaacatattccacaagtcttttattgaagtaaatgaa 46544830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 4613766 - 4613703
Alignment:
Q  13 tcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttaccttt 76  Q
    |||||||||| ||||  |||||||| |||  |||||||||||||||||| ||||||||||||||    
T  4613766 tcaatatttcttttgagcttgaaacgtctagtatgctgaaggagctaggagtggttttaccttt 4613703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 180
Target Start/End: Complemental strand, 46236728 - 46236545
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtga 105  Q
    ||||| ||||||||||| |||||| |||||||| || ||| | |||||||| |||| ||| ||||||||||| |   ||||||| |||| ||||| |||     
T  46236728 ccaagattcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaattgtgg 46236629  T
Q  106 actcta---------gtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaag 180  Q
    | |||          || ||||||||| | |||| || ||||||||||| ||||| ||||| ||||||||||||||||| ||||    
T  46236628 attcttcttttgagggtgaaaacctatatgtttccaacatatttcacaaatctttcattgaagtaaatgaagaaggcactgaag 46236545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 46526245 - 46526167
Alignment:
Q  111 agtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcag 189  Q
    ||||||||||| |   |||| |||||||||||||||||| | ||||| |||||||| | |||||||||||||| |||||    
T  46526245 agtcaaaacctttacgtttccaaaatatttcacaagtctctcattgaagtaaatgagggaggcaccgaagctgctgcag 46526167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 51944087 - 51944185
Alignment:
Q  12 ttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtgaactct 110  Q
    ||||||||||||||||  |||||| || ||  |||||| ||| ||||||| ||||||||||||||| |   ||||||| |||| ||||||||| |||||    
T  51944087 ttcaatatttcatttgagcttgaagctactcgtatgctaaagaagctaggagtggttttacctttctcacctggaggttttacaaaaatggtggactct 51944185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 46548810 - 46548765
Alignment:
Q  127 tttctaaaatatttcacaagtcttttattgacgtaaatgaagaagg 172  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  46548810 tttctaaaatatttcacaagtctttcattgaagtaaaagaagaagg 46548765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 4581187 - 4581139
Alignment:
Q  135 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 183  Q
    ||||||||||||||||||||||| |||||||||| ||| || |||||||    
T  4581187 atatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctg 4581139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 4613644 - 4613596
Alignment:
Q  135 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 183  Q
    ||||||||||||||||||||||| |||||||||| ||| || |||||||    
T  4613644 atatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctg 4613596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 47397218 - 47397171
Alignment:
Q  30 cttgaaacttctgatatgctgaaggagctaggcgtggttttacctttc 77  Q
    |||||||||||||||||| |||||||| |||| ||| |||||||||||    
T  47397218 cttgaaacttctgatatgttgaaggagttaggagtgattttacctttc 47397171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 21464118 - 21463943
Alignment:
Q  12 ttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtgaactcta 111  Q
    ||||| ||||| ||||| ||||||  ||||||||||||||| |||||||||||||||||||||||| |  | |||| | | || ||||||||| |||||     
T  21464118 ttcaagatttcttttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttacctttctctgaaggagctttgacaaaaatggtggactctc 21464019  T
Q  112 g------tcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagc 181  Q
    |      ||||||||| | | | || || ||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  21464018 gaattgctcaaaacctttatgtgtccaacatatttcacaagtcttttattgaagtaaacgaagaaggtaccgaagc 21463943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 9675630 - 9675438
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtga 105  Q
    ||||| |||||  |||||||||| ||||||||||||   ||| ||||||||||||| ||| ||||||||||| |   ||||||| | || |||||||||     
T  9675630 ccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtgg 9675531  T
Q  106 actct------agtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagcca 192  Q
    |||||       ||||| || | | | |||| || |||||||||||||||   ||||| |||||||| |||||||| ||||||| | ||||||    
T  9675530 actctcttgaaggtcaagacttttctgtttccaacatatttcacaagtctaccattgaagtaaatgaggaaggcactgaagctgctacagcca 9675438  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 9692652 - 9692469
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtga 105  Q
    ||||| |||||  |||||||||| ||||||||||||  ||||  ||||||| |||| |||  |||||||||| |   ||||||| | || |||||||||     
T  9692652 ccaagattcaaattttcatttgggcttgaaacttctcgtatgacgaaggagttaggagtgagtttacctttctcttctggaggtttgacaaaaatggtgg 9692553  T
Q  106 actcta------gtcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctg 183  Q
    |||||       ||||| |||| | | |||| || ||||||||||||||||| ||||| ||||| || |||||||| |||||||    
T  9692552 actctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgaagtaaacgaggaaggcactgaagctg 9692469  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 15556203 - 15556274
Alignment:
Q  6 ccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttc 77  Q
    |||| ||||||||| ||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  15556203 ccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttc 15556274  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 35162642 - 35162821
Alignment:
Q  19 tttcatttggacttgaaacttctgatatgctgaaggagctaggcgtggttttacctttcaccaatggaggtcttactaaaatggtgaactcta------g 112  Q
    |||||| ||| ||||||||||||  | |||||||||| ||||| ||| ||||||||||| |   ||||||| | || ||||||||| ||||        |    
T  35162642 tttcatatgggcttgaaacttctcgtgtgctgaaggatctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactcacttgaagg 35162741  T
Q  113 tcaaaacctatgtatttctaaaatatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagcca 192  Q
    ||||||||| |   |||| || ||||||||||||||||| ||||| ||||||||  ||||||||| ||||| ||||||||    
T  35162742 tcaaaaccttttagtttccaacatatttcacaagtctttcattgaagtaaatgagaaaggcaccgtagctgctgcagcca 35162821  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 35155744 - 35155801
Alignment:
Q  135 atatttcacaagtcttttattgacgtaaatgaagaaggcaccgaagctgttgcagcca 192  Q
    |||||||| |||| ||||||||| ||||| ||| |||||||  |||||||||||||||    
T  35155744 atatttcagaagtgttttattgaagtaaacgaaaaaggcactaaagctgttgcagcca 35155801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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