View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15175_high_44 (Length: 207)

Name: NF15175_high_44
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15175_high_44
NF15175_high_44
[»] chr3 (3 HSPs)
chr3 (1-113)||(4850505-4850617)
chr3 (1-72)||(4863757-4863828)
chr3 (36-135)||(12881022-12881123)
[»] chr8 (3 HSPs)
chr8 (39-144)||(17315368-17315473)
chr8 (39-144)||(17337279-17337384)
chr8 (20-137)||(33168382-33168499)
[»] chr4 (1 HSPs)
chr4 (34-126)||(31371771-31371864)
[»] chr1 (2 HSPs)
chr1 (1-97)||(15917954-15918049)
chr1 (71-126)||(37627433-37627488)
[»] chr2 (2 HSPs)
chr2 (46-117)||(8172929-8173000)
chr2 (78-144)||(24185347-24185413)
[»] scaffold0003 (1 HSPs)
scaffold0003 (50-117)||(356862-356929)
[»] chr6 (1 HSPs)
chr6 (67-123)||(28973920-28973976)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4850505 - 4850617
Alignment:
Q  1 tttcatttctttacatctgtgttctttactcttctgttctttacatttttagttatttatcttcatgtcttttactttcatgtctttatatattaatcat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  4850505 tttcatttctttacatttgtgttctttactcttctgttctttacattttaagttatttactttcatgtcttttactttcttgtctttatatattaatcat 4850604  T
Q  101 tcgtctactatga 113  Q
    |||||||||||||    
T  4850605 tcgtctactatga 4850617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4863757 - 4863828
Alignment:
Q  1 tttcatttctttacatctgtgttctttactcttctgttctttacatttttagttatttatcttcatgtcttt 72  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||| |||  |||||||||||||||||    
T  4863757 tttcatttctttacatttgtattctttacttttctgttctttacattttcagtattttatcttcatgtcttt 4863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 12881022 - 12881123
Alignment:
Q  36 gttctttacatttttagttatttatcttcatgtcttttactttcatgtctttatata--ttaatcattcgtctactatgatcatatgtgagtaaactatt 133  Q
    ||||||||||||| |||| |||||  || ||| ||||||||||||||||||||||||  ||||||  | |||||||||||||||  ||||||| ||| ||    
T  12881022 gttctttacatttctagtcatttacttttatgccttttactttcatgtctttatatattttaatcccttgtctactatgatcatgggtgagtagactttt 12881121  T
Q  134 ct 135  Q
    ||    
T  12881122 ct 12881123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 17315473 - 17315368
Alignment:
Q  39 ctttacatttttagttatttatcttcatgtcttttactttcatgtctttatatattaatcattcgtctactatgatcatatgtgagtaaactattctagc 138  Q
    ||||||||||| |||||||||| |||||| ||||   |||||||| ||||||| ||||||  | |||||||||||||||  ||||||||||||||||||     
T  17315473 ctttacattttcagttatttattttcatgcctttatatttcatgtatttatattttaatcccttgtctactatgatcatgagtgagtaaactattctagt 17315374  T
Q  139 cttgag 144  Q
    ||||||    
T  17315373 cttgag 17315368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 17337384 - 17337279
Alignment:
Q  39 ctttacatttttagttatttatcttcatgtcttttactttcatgtctttatatattaatcattcgtctactatgatcatatgtgagtaaactattctagc 138  Q
    ||||||||||| |||||||||| |||||| ||||   |||||||| ||||||| ||||||  | |||||||||||||||  ||||||||||||||||||     
T  17337384 ctttacattttcagttatttattttcatgcctttatatttcatgtatttatattttaatcccttgtctactatgatcatgagtgagtaaactattctagt 17337285  T
Q  139 cttgag 144  Q
    ||||||    
T  17337284 cttgag 17337279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 33168499 - 33168382
Alignment:
Q  20 tgttctttactcttctgttctttacatttttagttatttatcttcatgtcttttactttcatgtctttatatattaatcattcgtctactatgatcatat 119  Q
    ||||||||||| || ||||||| || |||| | | || ||| || |||||||||||||||| |||||||||| ||||||  | |||||||||||||||      
T  33168499 tgttctttacttttatgttcttcaccttttaaatcatctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcatta 33168400  T
Q  120 gtgagtaaactattctag 137  Q
    ||||||||||| ||||||    
T  33168399 gtgagtaaacttttctag 33168382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 31371864 - 31371771
Alignment:
Q  34 ctgttctttacatttttagttatttatcttcatgtcttttactttcatgtctttatatat-taatcattcgtctactatgatcatatgtgagta 126  Q
    |||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||| | |||||  | ||| ||||||||||| ||||||||    
T  31371864 ctgttctttacatttccagccatttatcttcatgtcttttactttcatgtctttatatttataatccattgtcaactatgatcatgtgtgagta 31371771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 15917954 - 15918049
Alignment:
Q  1 tttcatttctttacatctgtgttctttactcttctgttctttacatttttagttatttatcttcatgtcttttactttcatgtctttatatattaat 97  Q
    ||||| ||||||||||   ||||||||||| ||||||||||||||||  |||| |||||| || |||||||||||||||| || ||||||| |||||    
T  15917954 tttcagttctttacattcttgttctttacttttctgttctttacattcctagtcatttat-tttatgtcttttactttcacgtgtttatattttaat 15918049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 37627433 - 37627488
Alignment:
Q  71 tttactttcatgtctttatatattaatcattcgtctactatgatcatatgtgagta 126  Q
    ||||||||||||||||||| | ||||||  | ||||||||||||||| ||||||||    
T  37627433 tttactttcatgtctttatcttttaatctcttgtctactatgatcatgtgtgagta 37627488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 8173000 - 8172929
Alignment:
Q  46 tttttagttatttatcttcatgtcttttactttcatgtctttatatattaatcattcgtctactatgatcat 117  Q
    |||| |||| |||||||| ||||||||||||||||||| ||||||| ||||||  | |||| ||||||||||    
T  8173000 ttttcagttgtttatctttatgtcttttactttcatgtgtttatattttaatctcttgtctgctatgatcat 8172929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 24185413 - 24185347
Alignment:
Q  78 tcatgtctttatatattaatcattcgtctactatgatcatatgtgagtaaactattctagccttgag 144  Q
    ||||||||||| || ||||||  | |||||||||||||||| ||||||| ||| |||||| ||||||    
T  24185413 tcatgtctttacattttaatccattgtctactatgatcataagtgagtagacttttctagtcttgag 24185347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 356929 - 356862
Alignment:
Q  50 tagttatttatcttcatgtcttttactttcatgtctttatatattaatcattcgtctactatgatcat 117  Q
    |||| ||||||||| |||||||||| || ||||||| ||||||||||||  | ||||| |||||||||    
T  356929 tagtcatttatctttatgtcttttatttccatgtctctatatattaatcccttgtctattatgatcat 356862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 28973920 - 28973976
Alignment:
Q  67 gtcttttactttcatgtctttatatattaatcattcgtctactatgatcatatgtga 123  Q
    ||||||||||||||||||||||||| ||||||  |  ||||||||||| || |||||    
T  28973920 gtcttttactttcatgtctttatattttaatcccttttctactatgattatgtgtga 28973976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University