View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_5 (Length: 561)
Name: NF15175_high_5
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 2242593 - 2243145
Alignment:
| Q |
1 |
cttagtttttatatgtcagtttgttaacactaagtttgctattgtgaatgttagttctgctgttgctttgaatattgtggcatatgggaatcacatattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242593 |
cttagtttttatatgtcagtttgttaacactaagtttgctattgtgaatgttagttctgctgttgctttgaatattgtggcatatgggaatcacatattc |
2242692 |
T |
|
| Q |
101 |
taaagacactagctggcttttcttgacatattggattaaatctcaacctacaatgtaaacttctctaaacagtatagctgaccacttttattagggactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242693 |
taaagacactagctggcttttcttgacatattggattaaatctcaacctacaatgtaaacttctctaaacagtatagctgaccacttttattagggactg |
2242792 |
T |
|
| Q |
201 |
taataagagtacgttgcttatttgcggctgattcgattgttctgtttgtttcgaatttggggctaccgatatcggcaacacatacaatggttggcgcagt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242793 |
taataagagtacgttgcttatttgcggctgattcgattgttctgtttgtttcgaatttggggctaccgatatcggcaacacatacaatggttggcgcagt |
2242892 |
T |
|
| Q |
301 |
aatgggagttggaatttggtgaaggggattggcaaaggatgaaatttttggtgtttggtttgtatgccaagatgtgattccaaatgacagtgaagaaatt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242893 |
aatgggagttggaatttggtgaaggggattggcaagggatgaaatttttggtgtttggtttgtatgccaagatgtgattccaaatgacagtgaagaaatt |
2242992 |
T |
|
| Q |
401 |
gcaatcatgttacttttctctggataagttgaaataacttagcaatccttagactttgaaggatgaaagttcagagaaaatattnnnnnnnngtttctat |
500 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2242993 |
gcaatcatgttacttttctctagataagttgaaataacttagcaatccttagactttgaaggatgaaagttcagagaaaatatttaaaaaaagtttctat |
2243092 |
T |
|
| Q |
501 |
ctatgtacttcataaattcctttaacctttttctgtttttccttatctgtgct |
553 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2243093 |
ctatgtacttcataaattcctttaacctttttctgtttttccttatttgtgct |
2243145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 327 - 553
Target Start/End: Original strand, 31780117 - 31780352
Alignment:
| Q |
327 |
gattggcaaaggatgaaatttttggtgtttggtttgtatgccaaga-tgtgattccaaatga------cagtgaagaaattgcaatcatgttacttttct |
419 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||||||| | ||||||||||| || |
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| T |
31780117 |
gattggcaagggatgaaatttttggtgtttggtttgtatgtgaagactgtgattccaaattaatgacacagtgaagaaattgtagacatgttacttt-ct |
31780215 |
T |
|
| Q |
420 |
ctggataagttgaaataa----cttagcaatccttagactttgaaggatgaaagttcagagaaaatattnnnnnnnngtttctatctatgtacttcataa |
515 |
Q |
| |
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|| | ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
31780216 |
ctaggtaagtggaaataaataacttggcaatccttagactttgaaggatgaaagttcagagaaaatatttaaaaaaagtttctatgtatgtacttcataa |
31780315 |
T |
|
| Q |
516 |
attcctttaacctttttctgtttttccttatctgtgct |
553 |
Q |
| |
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||||||||||||||||| ||||||||||||| |||||| |
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| T |
31780316 |
attcctttaaccttttt-tgtttttccttatttgtgct |
31780352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 326 - 480
Target Start/End: Original strand, 29057137 - 29057292
Alignment:
| Q |
326 |
ggattggcaaaggatgaaatttttggtgtttggtttgtatgccaaga-tgtgattccaaatgacagtgaagaaattgcaatcatgttacttttctctgga |
424 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| |||| |||| ||||||| || | || | ||| ||||||||| |||||||||||||| | | |
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| T |
29057137 |
ggattggcaagggatgaaatttttggtgtttgatttctatgtgaagactgtgattgcagaagagactgatgaaattgcagacatgttacttttctgtagc |
29057236 |
T |
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| Q |
425 |
taagttgaaataacttagcaatccttagactttgaaggatgaaagttcagagaaaa |
480 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
29057237 |
taagttgaaataatttagcaatcgttagactttgaaggatgaaaattcagagaaaa |
29057292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 313
Target Start/End: Original strand, 29056806 - 29056898
Alignment:
| Q |
221 |
tttgcggctgattcgattgttctgtttgtttcgaatttggggctaccgatatcggcaacacatacaatggttggcgcagtaatgggagttgga |
313 |
Q |
| |
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|||||||||| ||| |||||||||||| ||| || | |||||||||||||||| |||||||| | ||||| |||||||||||||||||| |
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| T |
29056806 |
tttgcggctgcttcagttgttctgtttgcttcaaagctagggctaccgatatcggggacacatacgctagttggtgcagtaatgggagttgga |
29056898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 34860480 - 34860401
Alignment:
| Q |
50 |
gttagttctgctgttgctttgaatattgtggcatatgggaatcacatattctaaagacactagctggcttttcttgacat |
129 |
Q |
| |
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|||||||||| |||| ||||||||||||||||| | || |||| ||||||||||| | |||||||||| |||||||| |
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| T |
34860480 |
gttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacat |
34860401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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