View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15175_high_6 (Length: 559)
Name: NF15175_high_6
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 13872439 - 13871890
Alignment:
| Q |
1 |
gattttatcgtgtatgtgtacatgggtggcattaaaaatgttcgtttcaagcacttatggataagataaacaagaagtttgcattaagggaaacaaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872439 |
gattttatcgtgtatgtgtacatgggtgacattaaaaatgttcgtttcaagcacttatggataagataaacaagaagtttgcattaagggaaacaaattt |
13872340 |
T |
|
| Q |
101 |
aaaattagtaggatggataaatagtttgattaagcacttttaaactttttgtttataccaggcatcgctacaaataatcaatggcctcatttccttgtta |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13872339 |
aaaattagtagaatggataaatagtttgattaagcacttttaaaatttttgtttataccaggcatcgctacaaataatcaatggccccatttccttgtta |
13872240 |
T |
|
| Q |
201 |
attgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtctgtcatt--ctgt----tgtcggagtgtcaaatcatagtattgatag |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | || ||||||| |||||||||||||||||||||| |
|
|
| T |
13872239 |
attgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtcattctgttgccgtaacttgtcggattgtcaaatcatagtattgatag |
13872140 |
T |
|
| Q |
295 |
cataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872139 |
cataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgt |
13872040 |
T |
|
| Q |
395 |
actgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacattcacagatgggaccatcactagaggcactg |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872039 |
actgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacattcacagatgggaccatcactagaggcactg |
13871940 |
T |
|
| Q |
495 |
caatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaaga |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871939 |
caatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaaga |
13871890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 146 - 544
Target Start/End: Complemental strand, 13884584 - 13884179
Alignment:
| Q |
146 |
tttttgtttataccaggcatcgctacaaataatcaatggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttgg |
245 |
Q |
| |
|
||||||||||||| | |||| || ||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13884584 |
tttttgtttatacga--catcactgcaagtaattaatggcttcatttccttgttaattgtgtttatgggaagtgatcactacacttgttgaagttcttgg |
13884487 |
T |
|
| Q |
246 |
taattgtctgtcat------tctgttgtcggagtgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaacta------------ |
327 |
Q |
| |
|
|||||||| || | ||||| | ||||||||| |||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
13884486 |
taattgtcattctggtgccgtaagttgttagtttgtcaaatcttagttttgatagcataatttccttt--aactgttttatggaactaacaagtgagaac |
13884389 |
T |
|
| Q |
328 |
--tcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtt |
425 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
13884388 |
tatcaagtgatcacctcacttgtgaagttctttgtaattgtctttctccggcatcccaacgagtaatgtcctgctgaatgcttctttctttatcatggtt |
13884289 |
T |
|
| Q |
426 |
tagagtggtgattctgcaagaccacttgaccaggtacattcacagatgggaccatcactagaggcactgcaatttgcatataccaagaattatcaaatcg |
525 |
Q |
| |
|
||| || ||||| ||||| || |||||||||||||| ||||| |||| || ||||||||| | || ||| |||||||||| ||| |||| |
|
|
| T |
13884288 |
taggttgatgattttgcaa--------gatcaggtacattcacaaatggggccattgctggaggcactgaagttagcagataccaagaagaatc-gatcg |
13884198 |
T |
|
| Q |
526 |
acagttcaaaagtgaaaga |
544 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
13884197 |
acagttcaaaagtaaaaga |
13884179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 299 - 537
Target Start/End: Complemental strand, 13882607 - 13882377
Alignment:
| Q |
299 |
atttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtactg |
398 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| || | ||| | ||||||||| |
|
|
| T |
13882607 |
atttcatttttaactgttttatgggactatactgtgatcctctcacttgttaagttctttgtaattgtctttctccagcgtcattacatgcaatgtactg |
13882508 |
T |
|
| Q |
399 |
ctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacattcacagatgggaccatcactagaggcactgcaat |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||| ||||| || ||||||||| | | |
|
|
| T |
13882507 |
ctgaatgtttgtttctttatcatggtttagagtggtgattttgcaa--------gaccagttacattcacgattggggccatcgctggaggcactgaagt |
13882416 |
T |
|
| Q |
499 |
ttgcatataccaagaattatcaaatcgacagttcaaaag |
537 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
13882415 |
ttgcagataccaagaagaatcaaatcaacagttcaaaag |
13882377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 12957646 - 12957719
Alignment:
| Q |
180 |
aatggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
12957646 |
aatggcctcatttccttgttaattgtgtttatgggaagtgattactacactttttgaagttcttggtaattgtc |
12957719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 13876736 - 13876670
Alignment:
| Q |
73 |
agaagtttgcattaagggaaacaaatttaaaattagtaggatggataaatagtttgattaagcactt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
13876736 |
agaagtttgcattaagggaaacaaatttaaaattagtaagatggataaatagtttgattaaacactt |
13876670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 16025153 - 16025043
Alignment:
| Q |
288 |
ttgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacga |
387 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||| ||||| | |||||| ||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
16025153 |
ttgatagcaccatttcatttttaactgttttatgggactatcaaatgatcgatttacttgtgaagttctttataattgtctttctccggcatcactacga |
16025054 |
T |
|
| Q |
388 |
gtaatgtactg |
398 |
Q |
| |
|
|| |||||||| |
|
|
| T |
16025053 |
gtgatgtactg |
16025043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 273 - 363
Target Start/End: Complemental strand, 13874491 - 13874401
Alignment:
| Q |
273 |
tgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaat |
363 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| ||||| || |||||| || |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13874491 |
tgtcaaatcatagcattgataacatcatttaattttcaatggttttacgggactatcaagtgatcccctcacttgttaagttctttgtaat |
13874401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 14397150 - 14397237
Alignment:
| Q |
310 |
aactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtact |
397 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||| | |||||||||||||| || |||| ||||||| | | |||||||||||| |
|
|
| T |
14397150 |
aactgttttatgggactatcaagtgttcccctcacttttaaagttctttgtaatcgtgtttcaccggcatcacaatgagtaatgtact |
14397237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 16025007 - 16024957
Alignment:
| Q |
397 |
tgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagac |
447 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
16025007 |
tgctgaatgtttttttctttatcatggtttagggtggtgattctgctagac |
16024957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 40165746 - 40165794
Alignment:
| Q |
399 |
ctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagac |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
40165746 |
ctgaatgtttgtttctttatcatggtttaggctggtgattctgctagac |
40165794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 544
Target Start/End: Original strand, 14397343 - 14397416
Alignment:
| Q |
471 |
atgggaccatcactagaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaaga |
544 |
Q |
| |
|
||||| |||||||| || ||| || | || ||||||||||||||| |||||||||| |||||||||| |||||| |
|
|
| T |
14397343 |
atggggccatcactggaagcattgaagttagcatataccaagaataatcaaatcgatagttcaaaagcgaaaga |
14397416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 14392729 - 14392781
Alignment:
| Q |
394 |
tactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaaga |
446 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||| |||| ||||||||||||| |
|
|
| T |
14392729 |
tactgctaaatgtttgtgtcattatcatggtttaaagtgttgattctgcaaga |
14392781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 13874605 - 13874513
Alignment:
| Q |
177 |
atcaatggcctcatttcc-ttgttaattgtgtttatagg---aagtgatcactacacttgttgaagttcttggtaattgtctgtcattctgttg |
266 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| || |||||||| | ||||||| ||||||||||||||||| || ||||||| ||| |
|
|
| T |
13874605 |
atcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttg-tgaagttcttggtaattctcattcattctattg |
13874513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13876957 - 13876911
Alignment:
| Q |
1 |
gattttatcgtgtatgtgtacatgggtggcattaaaaatgttcgttt |
47 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
13876957 |
gattttattgtgtatgtatacatgggtggcatgaaaaaggttcgttt |
13876911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 14392607 - 14392653
Alignment:
| Q |
314 |
gttttatggaactatcaagtgatcacctcacttgttaagttctttgt |
360 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
14392607 |
gttttatgggactatcaagtgatcccctcacttgtaaagttcattgt |
14392653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University