View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_high_8 (Length: 492)
Name: NF15175_high_8
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 479
Target Start/End: Complemental strand, 37358286 - 37357822
Alignment:
| Q |
8 |
agcagcacagacatcctcaccctgcaaattgaattcaaatgaagttaaaaactaatctttcaaaagtttaacaatcaatgataaatttttaacatatata |
107 |
Q |
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| T |
37358286 |
agcagcacaaacatcctcaccctgcaaattgaattcaaatgaagttaaaaactaatctttcaaaagtttaacaatcaatgataaatttttaacatatata |
37358187 |
T |
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| Q |
108 |
cctcattaacagctccagtaggcaatttccatattcctttaccactgaatctaccgnnnnnnncctgaaccacaaggacctatatgnnnnnnnnnnnnnn |
207 |
Q |
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| T |
37358186 |
cctcattaacagctccagtaggcaatttccatattcctttaccactgaatctaccgtttttttcctgaaccacaaggacctatatgaaataaaaataaaa |
37358087 |
T |
|
| Q |
208 |
nnnnntttattagtacactacacattaagaattaagaaatatgtatggtcacatcaaggtagatattgactccaggttcatgaaaattacaactggtcaa |
307 |
Q |
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| T |
37358086 |
taaattttattagtacactacacattaagaa-------atatgtatggtcacatcaaggtagatattgactccaggttcatgaaaattacaactggtcaa |
37357994 |
T |
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| Q |
308 |
tgaaatatagttttttagtctagccaaaatgtccaaaatagtcaaataaaaaatttgaatgcttatgaaacaccaagattggtacgagacaccgaacatg |
407 |
Q |
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| T |
37357993 |
tgaaatatagttttttagtctagccaaaatgtccaaaatagtcaaataaaaaatttgaatgcttatgaaacaccaagattggtacgagacaccgaacatg |
37357894 |
T |
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| Q |
408 |
tttcggtgtcagacaccgaacacaccttcaatttgattaatnnnnnnntatagaaggattacctccatattg |
479 |
Q |
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| T |
37357893 |
tttcggtgtcagacaccgaacacaccttcaatctgattaataaaaaaatatagaaggattacctccatattg |
37357822 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 973648 - 973703
Alignment:
| Q |
104 |
tatacctcattaacagctccagtaggcaatttccatattcctttaccactgaatct |
159 |
Q |
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| T |
973648 |
tatacctcattaacagctctagtaggtgatttccatattcctttgcgactgaatct |
973703 |
T |
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