View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15175_low_1 (Length: 738)
Name: NF15175_low_1
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 678; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 17 - 726
Target Start/End: Original strand, 5352282 - 5352991
Alignment:
| Q |
17 |
aatatgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattc |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352282 |
aatatgattgttgcaaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattc |
5352381 |
T |
|
| Q |
117 |
aagtgctcttttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgcaaaatttg |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5352382 |
aagtgctattttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgaaaaatttg |
5352481 |
T |
|
| Q |
217 |
aggtatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttttcttctttaatta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5352482 |
aggtatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttgtcttctttaatta |
5352581 |
T |
|
| Q |
317 |
cttcacatcagaaaataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatc |
416 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352582 |
cttcacatcagaacataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatc |
5352681 |
T |
|
| Q |
417 |
tgccagcggagaaaaatggggtcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttca |
516 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5352682 |
tgccagcggagaaaaatgggttcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggaccttttgattcttca |
5352781 |
T |
|
| Q |
517 |
ctatccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352782 |
ctatccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcc |
5352881 |
T |
|
| Q |
617 |
tacaactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagttacttgacatatcagataatcaatatctcca |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5352882 |
tacaactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagtttcttgacatatcagataatcaatatctcca |
5352981 |
T |
|
| Q |
717 |
tggttcttta |
726 |
Q |
| |
|
|||||||||| |
|
|
| T |
5352982 |
tggttcttta |
5352991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 713
Target Start/End: Original strand, 5376628 - 5377324
Alignment:
| Q |
17 |
aatatgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattc |
116 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
5376628 |
aatatgattgttgcaaatggcatggtgtaacatgcaaagatggacatgttacagcccttgatcttagtcgagagtctatttccggaggacttaacgattc |
5376727 |
T |
|
| Q |
117 |
aagtgctcttttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgcaaaatttg |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||| |||||| | ||| ||| |||||||||| ||| ||||||| ||||| |||||| |
|
|
| T |
5376728 |
aagtgccattttcagcctgcaatatctgcagggtctgaatttggcttttaataagtttaattttgtgattcctcaagcgctgcataaactgcagaatttg |
5376827 |
T |
|
| Q |
217 |
aggtatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttttcttctttaatta |
316 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5376828 |
aggtatctcaacttgtctgatgctggctttgaggggcaggtcccaaaagaaattgctcaccttacaaggttggttactcttgatttgtcttctttaatta |
5376927 |
T |
|
| Q |
317 |
cttcacatcagaaaataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatc |
416 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5376928 |
cttcacgtcaaagcctaaaacttgagaatccaaatatagaaatgcttgtgaaaaaccttacagatatcacagaattgtatctagacggtgtagcaatatc |
5377027 |
T |
|
| Q |
417 |
tgccagcggagaaaaatggggtcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttca |
516 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||| | || ||||| |||||||||||| |||||| || ||||||||||| ||| |||||||||||||| |
|
|
| T |
5377028 |
ttccagcggagatgaatggggtcgtgctttatctttattggagggtgttcgtgttttgaccatgtcgtcgtgcaatctctcaggagctattgattcttca |
5377127 |
T |
|
| Q |
517 |
ctatccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcc |
616 |
Q |
| |
|
||| | |||||||| ||||||| | |||||| ||| ||| |||| || |||||||||| | |||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
5377128 |
ctagctaagcttcagtcactctctgttctaagattaaacaacaacaaattgtcaagcaaagtgcctgattcctttgcaaatttatccaatttaacaatcc |
5377227 |
T |
|
| Q |
617 |
tacaactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagttacttgacatatcagataatcaatatct |
713 |
Q |
| |
|
|| || | ||||||||||||||||||||||||| |||||| ||||||| ||| | || ||||||||| | |||||||||||||| |||||| |||| |
|
|
| T |
5377228 |
tagaaatcagtagttgtggcttgaatggttttttcccaaaggatatcttccaaatccacacattaaaggtccttgacatatcagacaatcaaaatct |
5377324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 719
Target Start/End: Original strand, 5390951 - 5391650
Alignment:
| Q |
20 |
atgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaag |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390951 |
atgattgttgccaatgggatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaag |
5391050 |
T |
|
| Q |
120 |
tgctcttttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgcaaaatttgagg |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| || ||| | ||| |||| ||||||||| ||| ||||||| ||||| |||||||| |
|
|
| T |
5391051 |
tgctcttttcagcctgcaatacttgcagagcctgaatttggctttgaataagtttaattccgtgattcctcaagcgctgcataaactgcagaatttgagc |
5391150 |
T |
|
| Q |
220 |
tatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttttcttctttaattactt |
319 |
Q |
| |
|
||||||||||| || |||||||||||||| || | ||||| | ||||||||||||||| ||||||||||||||||||||||| || ||| ||| || |
|
|
| T |
5391151 |
tatctcaacttgtccgatgctggctttgacgggtatgtcccaatagaaatttctcacctcacaaggttggttactcttgatttgtcatctacgtttattt |
5391250 |
T |
|
| Q |
320 |
cacatcagaaaataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatctgc |
419 |
Q |
| |
|
||||||||| ||||||||| || | |||||| | || ||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||| | | |
|
|
| T |
5391251 |
cacatcagagcctaaaacttgcaaagcaaaatatggcgatacttgtgaaaaacctcacaaatatcatagaattgtatctagatggtgtggcaatatgtac |
5391350 |
T |
|
| Q |
420 |
cagcggagaaaaatggggtcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttcacta |
519 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
5391351 |
cagcggagaggaatggggtcgtgctttatcttctttggagggtcttcgtgttttaagcatgtcatcctgcaatctctctggacctattgattcgtcacta |
5391450 |
T |
|
| Q |
520 |
tccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcctac |
619 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||| ||||| ||||| |||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
5391451 |
gttaagcttcaatcactctctcttctaaaattgagtcacaataaattgtcctgcatagtgccgaatttctttgcaaatttttccaatttaaccatcctac |
5391550 |
T |
|
| Q |
620 |
aactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagttacttgacatatcagataatcaatatctccatgg |
719 |
Q |
| |
|
| || ||||||||||||||| |||||| || ||||||| ||||||| ||| |||| | ||| || | |||||||||||||| |||||| ||||| |||| |
|
|
| T |
5391551 |
agctcagtagttgtggcttgcatggttctttcccaaaagatatcttccaaatacacaaattgaatgttcttgacatatcagacaatcaaaatctcaatgg |
5391650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 725
Target Start/End: Complemental strand, 5348776 - 5348071
Alignment:
| Q |
20 |
atgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaag |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
5348776 |
atgattgttgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcatgagtctatttccggaggacttgacaattcaag |
5348677 |
T |
|
| Q |
120 |
tgctcttttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgcaaaatttgagg |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||| ||||||| |||||||||| | |
|
|
| T |
5348676 |
tgctcttttcagcttgcaatatctgcagagtctgaatttggcttttaatgattttcgttctgtgattcctcaagactttgataagctacaaaatttgatg |
5348577 |
T |
|
| Q |
220 |
tatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttttcttctttaattactt |
319 |
Q |
| |
|
||||| ||||| || ||||||| ||| |||| || |||| || |||||||||||||| | ||||||||| |||||||||| || |||| | |||||| |
|
|
| T |
5348576 |
tatctgaacttgtccaatgctggatttaagggacagatccctaaggaaatttctcacctcaaaaggttggtctctcttgatttgtcgtcttcatttactt |
5348477 |
T |
|
| Q |
320 |
cacatcagaaaataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatctgc |
419 |
Q |
| |
|
||||||| ||||||||||| | |||||||||| | || | ||||||||||||||||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
5348476 |
cacatcacgtcctaaaacttgagcagccaaatatagcaatgtttattcgaaacctcacagatatcacaaagttgtatttagatggtgtagcaatatctgc |
5348377 |
T |
|
| Q |
420 |
cagcggagaaaaatggggtcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttcacta |
519 |
Q |
| |
|
|||||||||| ||||||| ||| |||| |||||| || ||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5348376 |
cagcggagaagaatggggccgttctttgtcttcattggggggactccgtgttctgagcatgtcatcatgcaatctctctggacctattgattcctcacta |
5348277 |
T |
|
| Q |
520 |
tccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcctac |
619 |
Q |
| |
|
| |||||| ||||||| | |||||||||||||| |||| || |||||||||||| ||||||| |||||||| || |||||||||||||| | | ||| |
|
|
| T |
5348276 |
gttaggcttcagtcactctctgttctaaaattgaacaacaacaaattgtcaagcatagtgccagactcctttgcgaaattctccaatttaacaaccttac |
5348177 |
T |
|
| Q |
620 |
aactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagttacttgacatatcagataatcaatatctccatgg |
719 |
Q |
| |
|
|| | ||||||||||||||||||||||| | ||||||| ||||||| ||| | || ||||||||| | |||||||||||||| |||||| |||| |||| |
|
|
| T |
5348176 |
aaatcagtagttgtggcttgaatggtttattcccaaaagatatcttccaaatccacacattaaaggtccttgacatatcagacaatcaaaatcttaatgg |
5348077 |
T |
|
| Q |
720 |
ttcttt |
725 |
Q |
| |
|
|||||| |
|
|
| T |
5348076 |
ttcttt |
5348071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 725
Target Start/End: Complemental strand, 5426096 - 5425391
Alignment:
| Q |
20 |
atgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaag |
119 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
5426096 |
atgattgttgccaatggaatggggtaacttgcatagaggggcatgttacagcccttgatcttagtcatgagtctatttccggaggacttaatgcttcaag |
5425997 |
T |
|
| Q |
120 |
tgctcttttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgcaaaatttgagg |
219 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||| |||| ||| |||| ||||| | || || ||||||||| |
|
|
| T |
5425996 |
ttctcttttcagcctgcaatatctgcagagtttgaatttagctttaaatgactttcattctatgatgcctcaagagctgcatcaacttcagaatttgagg |
5425897 |
T |
|
| Q |
220 |
tatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttttcttctttaattactt |
319 |
Q |
| |
|
||| | ||||| || | ||||||||| | || || |||| | ||||||| |||||| | ||||||||| ||||||||||| ||||||| | |||||| |
|
|
| T |
5425896 |
tatttgaacttctccaacgctggctttcaaggacagatccctacggaaatttttcacctcaaaaggttggtcactcttgatttgtcttcttcatttactt |
5425797 |
T |
|
| Q |
320 |
cacatcagaaaataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatctgc |
419 |
Q |
| |
|
||||||| | |||||||||||||||||||||| || || |||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
5425796 |
cacatcacgtcctcaaacttgagaatccaaatatagggatgtttatgaaaaacttcacagatatcacaaaattgtatctagatggtgtagcaatatcagc |
5425697 |
T |
|
| Q |
420 |
cagcggagaaaaatggggtcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttcacta |
519 |
Q |
| |
|
||| |||||| ||||||||||| |||||| | || || ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5425696 |
cagtggagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctctggacctattgattcttcgcta |
5425597 |
T |
|
| Q |
520 |
tccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcctac |
619 |
Q |
| |
|
| | |||||| ||||||| | |||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| | ||||| |
|
|
| T |
5425596 |
gcaaggcttcagtcactctctgttctaaaattgagtcacaataatttgtctagcatagtgccagactcctttgcaaatttctccaatttaacaaccctac |
5425497 |
T |
|
| Q |
620 |
aactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagttacttgacatatcagataatcaatatctccatgg |
719 |
Q |
| |
|
|| | ||||||||||||||||||||||||| ||||||| ||||||| ||| | || ||||||||| | |||||||||||| | |||||| |||| |||| |
|
|
| T |
5425496 |
aaatcagtagttgtggcttgaatggttttttcccaaaagatatcttccaaatccacacattaaaggtccttgacatatcatacaatcaaaatcttaatgg |
5425397 |
T |
|
| Q |
720 |
ttcttt |
725 |
Q |
| |
|
|||||| |
|
|
| T |
5425396 |
ttcttt |
5425391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 701
Target Start/End: Original strand, 5500150 - 5500832
Alignment:
| Q |
19 |
tatgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
5500150 |
tatgattgttgccaatggcatggggtaacatgcaaagatggacatgtgacagcccttgatcttagtcaagagtctatctcaggaggacttaatgattcaa |
5500249 |
T |
|
| Q |
119 |
gtgctcttttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgcaaaatttgag |
218 |
Q |
| |
|
||||||| |||||| ||||| | ||||||| ||||||||||| || ||| | || |||||||||||||| | || || |||| ||||| |||||||| |
|
|
| T |
5500250 |
gtgctctattcagcttgcaagacttgcagagcctgaatttggctttgaataagttcaattctgtgattcctcatgagatgtataaactgcagaatttgag |
5500349 |
T |
|
| Q |
219 |
gtatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttttcttctttaattact |
318 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| || ||||| |||||||||||||||| |||||||| |||| ||||||| | ||||||| ||||||| |
|
|
| T |
5500350 |
gtatctgaacttgtctgatgctggctttgaggggcaggtcccagaagaaatttctcacctaacaaggttagttattcttgatatgtcttcttcaattact |
5500449 |
T |
|
| Q |
319 |
tcacatcagaaaataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatctg |
418 |
Q |
| |
|
||| |||| | |||||||| ||| |||||||| | ||| || ||||| |||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
5500450 |
tcagatcacagcctaaaacttaggaagccaaatattacaatgcttgtgcaaaacttcaccgatatcacagaattatatttagatggtgtagcaatatctg |
5500549 |
T |
|
| Q |
419 |
ccagcggagaaaaatggggtcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttcact |
518 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
5500550 |
ccagcggagaggaatggggtcgtgctttatcttcgttagaaggtcttcgtgttctgagcatgtcatcatgcaatctctctggacccattgattcttcatt |
5500649 |
T |
|
| Q |
519 |
atccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatccta |
618 |
Q |
| |
|
| |||||||| || |||| | |||||||||||| |||||| || ||||| |||||| ||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
5500650 |
aggtaagcttcagtccctctttgttctaaaattgagccacaacaaattgtcgagcatagtgccagactcctttgcatatttctccaatttgaccatccta |
5500749 |
T |
|
| Q |
619 |
caactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagttacttgacatatcaga |
701 |
Q |
| |
|
||||| ||||||||||||||| |||||| || || || | ||||||| ||| |||||||||||||| | |||||| ||||||| |
|
|
| T |
5500750 |
caactcagtagttgtggcttgcatggttctttccaaagagatatcttccaaatacaaacattaaaggtccttgacttatcaga |
5500832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 725
Target Start/End: Original strand, 5410397 - 5411102
Alignment:
| Q |
20 |
atgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaag |
119 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5410397 |
atgattgttgccaatggcacggggtgacatgtaaacagggacatgttacagtccttgatcttagtcaagagtctatctccggaggacttaatgattcaag |
5410496 |
T |
|
| Q |
120 |
tgctcttttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgcaaaatttgagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||| ||| || ||||||||| |
|
|
| T |
5410497 |
tgctcttttcagcctgcaatatctgcagagtctgaatttggcttttaatcactttcgttctgtgattccgcaagacttgcataggctacataatttgagg |
5410596 |
T |
|
| Q |
220 |
tatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttttcttctttaattactt |
319 |
Q |
| |
|
||| | ||||| ||| |||| |||||| |||| || || ||| | |||||||||||||| | ||||||||| | |||||||||||||||| | ||| || |
|
|
| T |
5410597 |
tatttaaacttgtctaatgccggctttaagggacaggttccggaggaaatttctcacctcaaaaggttggtcattcttgatttttcttctaaatttattt |
5410696 |
T |
|
| Q |
320 |
cacatcagaaaataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatctgc |
419 |
Q |
| |
|
||| ||||| ||||||||||||| |||||||||| | ||| || ||||||| |||||||| |||||||| |||||||||||||| |||||||| || |
|
|
| T |
5410697 |
cactgcagaacttaaaacttgagaagccaaatataggaatgcttgtgcaaaaccttacagatattacagaattatatctagatggtgttgcaatatcagc |
5410796 |
T |
|
| Q |
420 |
cagcggagaaaaatggggtcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttcacta |
519 |
Q |
| |
|
|| ||||| ||||||||| | ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5410797 |
taggggagaggaatggggtcatcctttatctttattgaaggggcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttcacta |
5410896 |
T |
|
| Q |
520 |
tccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcctac |
619 |
Q |
| |
|
| |||||||||||||| | || ||||||||| ||| ||||| |||| | | ||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
5410897 |
gctaagcttcaatcactttcaattgtaaaattgagccaaaataaattgtttacaactgtgccagattggttcagaaatttctccaatttaaccatcctac |
5410996 |
T |
|
| Q |
620 |
aactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagttacttgacatatcagataatcaatatctccatgg |
719 |
Q |
| |
|
|||| ||||||||| |||||| ||||||| ||||||| ||||||| ||| |||| |||||||| | |||||||| ||| | |||||| | || |||| |
|
|
| T |
5410997 |
aactcagtagttgtaccttgaaaggttttttcccaaaagatatcttccaaatacacacattaaaagtccttgacatgtcaaacaatcaaaacctttatgg |
5411096 |
T |
|
| Q |
720 |
ttcttt |
725 |
Q |
| |
|
|||||| |
|
|
| T |
5411097 |
ttcttt |
5411102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 365 - 725
Target Start/End: Original strand, 5399760 - 5400118
Alignment:
| Q |
365 |
tgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatctgccagcggagaaaaatggggtcgtgctttatcttcactgaagggtct |
464 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||| | || || ||| || |
|
|
| T |
5399760 |
tgaaaaacctca--gatatcacaaaattgtatctagatggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatccattgggggggct |
5399857 |
T |
|
| Q |
465 |
tcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttcactatccaagcttcaatcactctattttctaaaattgaaccacaataat |
564 |
Q |
| |
|
| |||| |||||||||||||| ||||||||||||||||||| ||| ||| ||| | | |||||| ||||||| | |||||||||||| ||||||||| |
|
|
| T |
5399858 |
ttgtgtgctgagcatgtcatcaagcaatctctctggacctatccatttttcgctagcaaggcttcagtcactctctattctaaaattgagtcacaataat |
5399957 |
T |
|
| Q |
565 |
ttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcctacaactaagtagttgtggcttgaatggtttttccccaaaacatatct |
664 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| |||| ||||||| |||| | |
|
|
| T |
5399958 |
ttgtcaagcatagtgccagactcctttgcaaatttctccaatttaacaaccctacaaatcagtagttgtggcttgaatgtttttctcccaaaagatatat |
5400057 |
T |
|
| Q |
665 |
ttcaattacaaacattaaagttacttgacatatcagataatcaatatctccatggttcttt |
725 |
Q |
| |
|
| ||| | || ||||||||| | |||||||||||| | |||||| |||| |||||||||| |
|
|
| T |
5400058 |
tccaaatccacacattaaaggtccttgacatatcatacaatcaaaatcttaatggttcttt |
5400118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 5399281 - 5399419
Alignment:
| Q |
20 |
atgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaag |
119 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5399281 |
atgattgttgccaatggaatggggtaacttgcgtagagggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattctag |
5399380 |
T |
|
| Q |
120 |
tgctcttttcagcctgcaatatctgcagagtctgaattt |
158 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5399381 |
tgctcttttcaacctgcaatatctgcagagtctgaattt |
5399419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 5570527 - 5570568
Alignment:
| Q |
268 |
atttctcaccttacaaggttggttactcttgatttttcttct |
309 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
5570527 |
atttctcagcttacaaggttggttactcttgatctctcttct |
5570568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 713
Target Start/End: Original strand, 20326813 - 20327500
Alignment:
| Q |
17 |
aatatgattgttgccaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattc |
116 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20326813 |
aatatgattgttgcaaatggcatggtgtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaacgattc |
20326912 |
T |
|
| Q |
117 |
aagtgctcttttcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtgattcctaaagacttgcataagctgcaaaatttg |
216 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||| |||||| | ||| ||| |||||||||| ||| ||||||| ||||| |||||| |
|
|
| T |
20326913 |
aagtgccattttcagcctgca---------gggtctgaatttggcttttaataagtttaattttgtgattcctcaagcgctgcataaactgcagaatttg |
20327003 |
T |
|
| Q |
217 |
aggtatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttttcttctttaatta |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20327004 |
aggtatctcaacttgtctgatgctggctttgaggagcaggtcccaaaagaaattgctcaccttacaaggttggttactcttgatttgtcttctttaatta |
20327103 |
T |
|
| Q |
317 |
cttcacatcagaaaataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagcaatatc |
416 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20327104 |
cttcacgtcaaaacctaaaacttgagaatccaaatatagaaatgcttgtgaaaaaccttacagatatcacagaattgtatctagacggtgtagcaatatc |
20327203 |
T |
|
| Q |
417 |
tgccagcggagaaaaatggggtcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgattcttca |
516 |
Q |
| |
|
| |||||||||| | ||||||||||||||||||| | || ||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
20327204 |
ttccagcggagatgagtggggtcgtgctttatctttattggagggtgttcgtgttttgagcatgtcgtcgtgcaatctctcaggacctattgattcttca |
20327303 |
T |
|
| Q |
517 |
ctatccaagcttcaatcactctattttctaaaattgaaccacaataatttgtcaagcatactgccagattcctttgcaaatttctccaatttaaccatcc |
616 |
Q |
| |
|
||| | |||||||| ||||||| | |||||| ||| ||| |||| || |||||||||| | |||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
20327304 |
ctagctaagcttcagtcactctctgttctaagattaaacaacaacaaattgtcaagcaaagtgcctgattcctttgcaaatttctccaatttaacaatcc |
20327403 |
T |
|
| Q |
617 |
tacaactaagtagttgtggcttgaatggtttttccccaaaacatatctttcaattacaaacattaaagttacttgacatatcagataatcaatatct |
713 |
Q |
| |
|
|| || | ||||||||||||||||||||||||| |||||| | ||||| ||| | || ||||||||| | |||||||||||||| |||||| |||| |
|
|
| T |
20327404 |
tagaaatcagtagttgtggcttgaatggttttttcccaaaggaaatcttccaaatccacacattaaaggtccttgacatatcagacaatcaaaatct |
20327500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University