View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_11 (Length: 485)
Name: NF15175_low_11
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 21 - 476
Target Start/End: Original strand, 14260220 - 14260678
Alignment:
| Q |
21 |
agtccggaagaaacttggtttcataatatagatcaatggatgtactcaataggagtaaccactctatctgcacttagaatctgtccaactgtaatattct |
120 |
Q |
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| T |
14260220 |
agtccggaagaaacttggtttcataatatagatcaatggatgtactcaataggagtaaccactctatctgcacttagaatctgtccaactgtaatattct |
14260319 |
T |
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| Q |
121 |
caatcaattgttgaatttacaaatttatgttgtatatttctttatctaatttgagaatttgcaggaatcaatgtctatcataatggccactgttgaccaa |
220 |
Q |
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| T |
14260320 |
caatcaattgttgaatttgtaaatttatgttgtatatttctttatctaatttgagaatttgcaggaatcaatgtctatcataatggccactgttgaccaa |
14260419 |
T |
|
| Q |
221 |
tatgtcaccgatggtggttggtggtttttatcttgtgtttgtcatgaacacgttgttcttgacagtcctgcttactattgtgaaaggtgtaataagcatg |
320 |
Q |
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| T |
14260420 |
tatgtcaccgatgatggttggtggtttttatcttgtatttgtcatgaacaagttgttcctgacagtcctgcttactattgtgaaagatgtaataagcatg |
14260519 |
T |
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| Q |
321 |
ttttaatgattactccaaggtag---nnnnnnnnnaatattagtttggtacttataataaacttaatttggacatataaagtacaaattatttaagatta |
417 |
Q |
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| T |
14260520 |
ttttaatgattactccaaggtagttttttttttttaatattaatttggtacttataataaacttaatttggacatataaagtacaaattatttaagatta |
14260619 |
T |
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| Q |
418 |
atttggattagatataggtttcgcatcacattccgtgtgactgacaacacaggttctgc |
476 |
Q |
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| T |
14260620 |
atttggattggatataggtttcgcatcacattccatgtgactgacaacacaggatctgc |
14260678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 47 - 422
Target Start/End: Complemental strand, 22136279 - 22135905
Alignment:
| Q |
47 |
tatagatcaatggatgtactcaataggagtaaccactctatctgcacttagaatctgtccaactgtaatattctcaatcaattgttgaatttacaaattt |
146 |
Q |
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| T |
22136279 |
tatagattaataggtgtactcaacagtagtaaccactatatttgcacttagaatctgtctagtggtaattttctcaaccaattatttaatttataaattt |
22136180 |
T |
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| Q |
147 |
atgttgtatatttctttatctaatttgagaatttgcaggaatcaatgtctatcataatggccactgttgaccaatatgtcaccgatggtggttggtggtt |
246 |
Q |
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| T |
22136179 |
atgttatacatttcttt-tctaatgtgagaatttgcaggaatcgatggctatcataatggtcactgttgaccaatatatcactgatgatggttggtggta |
22136081 |
T |
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| Q |
247 |
tttatcttgtgtttgtcatgaacacgttgttcttgacagtcctgcttactattgtgaaaggtgtaataagcatgttttaatgattactccaaggtagnnn |
346 |
Q |
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| T |
22136080 |
tttatcttgtgtttgtcatgaacaagttgttccagacagtcctgcctactattgtgaaaggtgtaataagcatgtttgaatgattactctgaggtgggct |
22135981 |
T |
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| Q |
347 |
nnnnnnaatattagtttggtacttataataaacttaatttggacatataaagtacaaattatttaagattaatttg |
422 |
Q |
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| T |
22135980 |
tttttgtatattagtttggtatttataatgaatttaattttgatatatagagtactaattgtttataattaatttg |
22135905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 19723964 - 19724034
Alignment:
| Q |
190 |
aatgtctatcataatggccactgttgaccaatatgtcaccgatggtggttggtggtttttatcttgtgttt |
260 |
Q |
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| T |
19723964 |
aatgtctatcataatgaccactgttgaccaatatatcattgatgatggttggtggtatttatcttatgttt |
19724034 |
T |
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